Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28930 548 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 542 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 541 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 485 / 1e-171 BIK1 botrytis-induced kinase1 (.1) AT2G02800 470 / 3e-165 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 456 / 2e-160 PBL1 PBS1-like 1 (.1.2) AT5G15080 457 / 2e-159 Protein kinase superfamily protein (.1) AT1G14370 453 / 9e-159 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G01300 453 / 1e-157 Protein kinase superfamily protein (.1) AT1G26970 448 / 6e-157 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010835 [exp] 770 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 644 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003972 [exp] 561 / 0 AT5G02290 448 / 5e-158 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 545 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 540 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 533 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 530 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 529 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10005462 [exp] 528 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094300 [exp] 632 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 597 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 583 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 546 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 542 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G148000 [exp] 494 / 8e-175 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 489 / 6e-173 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.004G129000 [exp] 455 / 8e-159 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 453 / 9e-158 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 451 / 4e-157 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10024391 pacid=23174879 polypeptide=Lus10024391 locus=Lus10024391.g ID=Lus10024391.BGIv1.0 annot-version=v1.0 ATGGGACTTTGCTGGAGTAATCGGATCAAAGCATACAGTCCTTCTAATACAGGACTGAATTCAAAGGGTGATAGCAGAGATGGGAGGAGTTTGAGCTCCA GTAGCAAGTCGAGTTCCTTACCTCACACTCCTAGGAGTGAAGGTGAGATTCTGCAGTCCTCCAACTTAAAAGTCTTCAGCTTTGCTGAGCTGAGGAGCTC CACCAGGAATTTCAGACCGGATAGTGTGCTTGGGGAAGGCGGGTTTGGTTCGGTTTTCAAAGGGTGGATCGATGAGAATTCCTTAGCAGCTAGCAAGCCT GGAACTGGCATTATCATTGCTGTCAAGAGACTCAATCAAGAAGGGTGGCAGGGCCACAAGGAATGGCTGGCGGAAATAAATTATCTCGGGCAGTTGCATC ATCCGAACCTGGTCAAACTATTAGGCTACTGCTTGGAGGATGACCATCGTCTTCTCGTTTATGAGTTCATGTCTCGTGGTAGTTTGGAGAATCATTTGTT CAGGAAAGGTTCTCATGTTCATCCCCTTTCATGGAGCATTAGAATGAAGGTTGCTCTAGGGGCAGCAAGAGGGCTTGCATTTCTCCACAGCACTGAAGTA CAAGTTATATATCGCGATTTCAAGGCTTCCAACATTCTTCTCGACACGCACTACAATGCGAAGCTTTCTGATTTCGGCTTAGCAAGGGACGGTCCGACAG GTGATAAAAGCCATGTCTCTACTCGAGTTATGGGAACTTATGGATATGCAGCACCAGAATATCTTGCCACAGGTCATTTGACAGCAAAGAGCGACATCTA CAGTTTCGGAGTTGTACTTCTGGAAATGCTGTCCGGTCGCAGAGCCATAGACAAAAACCGGCCCTCGGGGCAACACAATCTGGTCGAATGGGCAAGACCT TACCTGATAAACAAACGAAGAGTACTGCGTATTATGGATGCACGTCTCGAGGGACAGTACTTGCTCCCCAAGGCTCAAAAAGTGGCCAACCTTGCCCTTC AATGCCTAGCCATGGAACCGAGGTTCAGGCCGAACATGGATGAAGTAGTGACAGTCCTGGAACAGGTGCAAGAATCAAAGAAGTCCGCAAAGGAGGACAA GCAACTGCAACAGGAGTCAAATGTTAAAGAGAAGTCTGGCAATGGTGGAGGCCGGCCTGCTTATCCTAGGCCTTCTGCTAATCCACTTTTTGCTTAA
AA sequence Show only first row Show all	>Lus10024391 pacid=23174879 polypeptide=Lus10024391 locus=Lus10024391.g ID=Lus10024391.BGIv1.0 annot-version=v1.0 MGLCWSNRIKAYSPSNTGLNSKGDSRDGRSLSSSSKSSSLPHTPRSEGEILQSSNLKVFSFAELRSSTRNFRPDSVLGEGGFGSVFKGWIDENSLAASKP GTGIIIAVKRLNQEGWQGHKEWLAEINYLGQLHHPNLVKLLGYCLEDDHRLLVYEFMSRGSLENHLFRKGSHVHPLSWSIRMKVALGAARGLAFLHSTEV QVIYRDFKASNILLDTHYNAKLSDFGLARDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDIYSFGVVLLEMLSGRRAIDKNRPSGQHNLVEWARP YLINKRRVLRIMDARLEGQYLLPKAQKVANLALQCLAMEPRFRPNMDEVVTVLEQVQESKKSAKEDKQLQQESNVKEKSGNGGGRPAYPRPSANPLFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	0	1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	2.0	0.8291
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	2.4	0.8537
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	10.4	0.8122
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	12.0	0.7952
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	12.1	0.8130
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	12.3	0.7915
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	14.9	0.7746
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	15.2	0.7880
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	17.0	0.8030
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	19.6	0.8019

Compare expression of checked genes

Lus10024391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.