Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02370 578 / 0 ATP binding microtubule motor family protein (.1) AT2G28620 199 / 3e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49650 196 / 1e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G23910 194 / 3e-53 ATP binding microtubule motor family protein (.1) AT5G47820 187 / 4e-50 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 187 / 7e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 187 / 7e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50240 186 / 7e-50 KICP-02 ATP binding microtubule motor family protein (.1) AT2G37420 183 / 1e-48 ATP binding microtubule motor family protein (.1) AT1G18550 177 / 3e-47 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025349 [exp] 921 / 0 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1) Lus10039243 [exp] 224 / 1e-63 AT5G23910 396 / 3e-127 ATP binding microtubule motor family protein (.1) Lus10027488 [exp] 219 / 1e-61 AT5G23910 327 / 9e-101 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 201 / 7e-56 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 201 / 4e-55 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009073 [exp] 200 / 2e-54 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 196 / 7e-53 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 191 / 3e-51 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 189 / 1e-50 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085300 [exp] 625 / 0 AT5G02370 660 / 0.0 ATP binding microtubule motor family protein (.1) Potri.015G146000 [exp] 221 / 5e-63 AT5G23910 439 / 2e-144 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 197 / 3e-53 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 191 / 2e-51 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.007G046700 [exp] 189 / 1e-50 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 187 / 5e-50 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 184 / 3e-49 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 183 / 1e-48 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 183 / 1e-48 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 182 / 3e-48 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10024395 pacid=23174962 polypeptide=Lus10024395 locus=Lus10024395.g ID=Lus10024395.BGIv1.0 annot-version=v1.0 ATGGAAACCGCTAAAACACCGAAATCCTTTAAGACAACTGCACATTCCTTGAAATCTACCACCGCGGACTCCGATTCCGGCTCCAAGGTCAGAGTAATTG TGAGGGTGCGTCCTTTCCTCCCCGCTGAAATCACGCCTAGGCAACAGCTGAGTTCCTGCGTTTCTGTTCTCGAGCAGAGCTCTGAATCCAGAGAAGAAGT GGCTGTTTTCCTCAAAGATCCGGAGACCTGCCGGAATGAGTGCTATATGCTGGATTCGTTTTTTGGTCCTGAAGATGGCAATGTTCGTCAGATTTTTCGG AGAGATGTGAGTCCTTTGATTCCAGGGATCTTTGAAGGATGTAATGCAACCGTTTTTGCATATGGAGCTACTGGTAGCGGGAAGACTTACACTATGCAGG GAACTGATGAATTGCCAGGCCTAATGTCACTTGCTATGTCCAATGTACTTTCGATACGCAACGAAACAGGAAGTAGTGCTGAAATTTCATACTATGAAGT ATATTTGGATAAGTGTTATGATCTTCTGGAGCACAATGAAACGGAGATCTCAATTCTCGATGACAAAGATGGTAAGATTCACCTCAAGGGACTATCTGGA GTCGCTGTCAGTTCAATGCGAGAGTTCCAGGAGGTGTTCTCTCGTGGGACTCAGAGAAGGAAGACTGCACATACGGGTCTAAATGATGTCTCCAGCAGGA GCCACGGGGTGCTGGTGATAACTGTTTCCACTCCTCTTGAAGATGGCTCTACCGTTTCTGGGAAGCTGAACCTCATAGATTTAGCTGGTAATGAGGATAA TAGGAAGACACTCAATGAGGGTATCCGCCTACTAGAGAGTGCCAAAATTAACCAGTCCTTGTTTGCATTGTCAAATGTCATCTATGCGCTGAACAACTAC AAACCGCGGGTACCATATCGGGAAAGCAAATTGACAAGGGTTTTGCAGGATTCCCTTGGAGGAACAAGTCGTGCTTTGATGGTTGCTTGTCTGAATCCTG CAGAGTATCAAGAATCAGTACATACCGTCAGCTTGGCATCTAGGTCTCGCCACGTGAAAACTTTTGTGCCTTCAGCTCAGAAGCTGGAGACACCGAAGGT GAAGATGTTATTGTCCGTTCCTTTCAGAAACTTGCTGCTAAACGAAGAAACTGTTCCTGATCGTTGTGTTGAGGTAAACCTTTCCGTATATGCATTATCT GTATTACTGAATGGCCATGTCAGAGCTCCATCTCTCATATTTGTTCACATGAAGCTAAACATACAGAACACAAAATTTGTTGGTGAGGAAAACACAGAGG AAAAGAGGACTGAAGAAGTTGCAGATATTACGGGATTCCATGAGGAGAAAGAGCACGAAGATATGAAGATAAAGTCAATGAATTGGAGCCACTTGACAAT TGCATCACAATCTGCTGAGAAGAAAAGCAACAGCACGGAGCAAAGCCCTCTGAGAAAAGTGCTCTCTCCCATATGTTCAAACATTAACAGGGTGGCTCTG GCTACTCCTCCAAAAGCACCGCTAAATACTCTCCAAGGAGAAAACAACTACAACAAAATGGTGACCACTCCACTTGAGAAGTTCAACGTCATGAGCTCTA GCCTAAAGAGCTCTCTGATTCAAGAATATCTCACCGTTCTGAACACGGCCAACAAAGGGGAACTTCTGGAAATTAAGGGAATCGGAGCGAGGCTTGCGGA ATACATAATTGAAGTCCGAGAAACAAACCCCTTTAGATCCTTGAGTGATTTGGAGAAGATAGGGCTCTCATCGAAGCAGGTTCATAACATGTTCAACAGA GCTGCGAGAGGGATATTTGAAGAGAGAAACGAAGGAAGCGCCCGAGTCGAGTAA
AA sequence Show only first row Show all	>Lus10024395 pacid=23174962 polypeptide=Lus10024395 locus=Lus10024395.g ID=Lus10024395.BGIv1.0 annot-version=v1.0 METAKTPKSFKTTAHSLKSTTADSDSGSKVRVIVRVRPFLPAEITPRQQLSSCVSVLEQSSESREEVAVFLKDPETCRNECYMLDSFFGPEDGNVRQIFR RDVSPLIPGIFEGCNATVFAYGATGSGKTYTMQGTDELPGLMSLAMSNVLSIRNETGSSAEISYYEVYLDKCYDLLEHNETEISILDDKDGKIHLKGLSG VAVSSMREFQEVFSRGTQRRKTAHTGLNDVSSRSHGVLVITVSTPLEDGSTVSGKLNLIDLAGNEDNRKTLNEGIRLLESAKINQSLFALSNVIYALNNY KPRVPYRESKLTRVLQDSLGGTSRALMVACLNPAEYQESVHTVSLASRSRHVKTFVPSAQKLETPKVKMLLSVPFRNLLLNEETVPDRCVEVNLSVYALS VLLNGHVRAPSLIFVHMKLNIQNTKFVGEENTEEKRTEEVADITGFHEEKEHEDMKIKSMNWSHLTIASQSAEKKSNSTEQSPLRKVLSPICSNINRVAL ATPPKAPLNTLQGENNYNKMVTTPLEKFNVMSSSLKSSLIQEYLTVLNTANKGELLEIKGIGARLAEYIIEVRETNPFRSLSDLEKIGLSSKQVHNMFNR AARGIFEERNEGSARVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	2.2	0.9760
AT2G37960			unknown protein		Lus10021116 [exp]	2.8	0.9676
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	3.5	0.9676
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	3.7	0.9720
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	5.5	0.9667
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	6.6	0.9519
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	6.9	0.9605
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	6.9	0.9623
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	9.9	0.9559
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	10.0	0.9595

Compare expression of checked genes

Lus10024395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.