Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07630 629 / 0 PLL5 pol-like 5 (.1) AT2G28890 604 / 0 PLL4 poltergeist like 4 (.1) AT3G09400 441 / 1e-147 PLL3 pol-like 3 (.1.2) AT5G02400 441 / 3e-147 PLL2 pol-like 2 (.1) AT2G46920 330 / 2e-102 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 312 / 2e-96 PLL1 poltergeist like 1 (.1) AT3G16560 255 / 1e-77 Protein phosphatase 2C family protein (.1) AT3G51370 149 / 2e-39 Protein phosphatase 2C family protein (.1.2) AT3G12620 148 / 4e-39 Protein phosphatase 2C family protein (.1.2) AT3G55050 148 / 5e-39 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025348 [exp] 1078 / 0 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 418 / 3e-137 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 417 / 9e-137 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10000896 [exp] 345 / 4e-109 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 344 / 9e-108 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10004793 [exp] 264 / 6e-81 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 263 / 1e-80 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10041861 [exp] 151 / 5e-40 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 147 / 6e-39 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085000 [exp] 664 / 0 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.009G030600 [exp] 415 / 3e-136 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 411 / 1e-134 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.001G144700 [exp] 348 / 4e-110 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.003G089500 [exp] 348 / 8e-110 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 340 / 7e-106 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 337 / 1e-104 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 251 / 1e-75 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 246 / 7e-74 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 239 / 3e-71 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10024397 pacid=23174887 polypeptide=Lus10024397 locus=Lus10024397.g ID=Lus10024397.BGIv1.0 annot-version=v1.0 ATGGGAAACGGGGTTACCAAGGTCAGCAACTGCTTCGTCAGTCCGGGAGACATCTCCTCCCGCCGCCACGACATCGTTGTCCACCTCGGCGACCCACTCC ACGAAGGCCTCGGCCACTCCTTCTGCTACATCCGACCCGACCCGGGCAGGATATCCACCCACCACAACTCCAAACTCCACTCCGCCGCCGACGAGACCAC CACCTTCCGATCAATCTCCGGCGCATCCGTCAGCGCCAACACTTCCTCAACTCCTTCCACCGTCCTCACCTCCGACTCTTCCACCTCCACAACTTTCAGC TCCGGGCTCGAACGCGCCTCCACTTTCGAAAGCTCCGAATCGTTCGCCTCCATCCCTCTCCAGCCCGTCCCTCGCAGCCAGCCCCTCCAACTCTCCGTCC CCGGCTCCGGACCCATGGAGCGCGGCTTCCTCTCCGGCCCGATCGAGCGCGGATTCTGCTCCGGCCCCATCGATCGCGCCGGCATCTACTCCGGTCCCAT CGATCACGAACCCGCTCCGAAACATAGCACTAGCTTCCCACTCCAGAGAAGCCTCTCCCACGGAAGTTTCAGAGTCGTCGAGGAAGACAAAAACGACAAA AAGTCAAGCAAAAAGCTAACGAGAAGAAACTTAATCAAGAAGCTGAAGAGAGTTCTCTCCAAAATTCCGAAATTGAAAAAATCGATCAAGGAAAATTCGG ACGTAGCGAACTCGAGCGCGGTCGGGTCGGGTAGCTCGGACCCGGAAGAGGAGGAAGAAGAAGAAGACACGAGCGAGTTTTCAGTCCGGAGTAATAATCT GGAGTGGGCCCAGGGGAAAGCAGGGGAGGATCGGGTCCACATAGTGATCTCCGAAGAACACGGGTGGGTGTTCGTCGGGATATATGACGGGTTCAACGGA CCCGACGCGCCCGACTACCTCCTCTCCAATCTCTACAACGACGTCCAGAGTGAGCTCAAGGGACTGCTGTGGAACGAAAACGATGAGTTACCACCGAAAG GGAAAGTGAATCACTTTGACGTTTTGAGAGCGCTGTCGAGGGCGTTAAGGAAGACGGAGGAGGCCTACTTCGACGTTGCCGACAAGATGGCGGCGGCGAA TCCGGAATTGGCGCTGATGGGATCGTGCGTTTTGGCGATGTTGATGAAAGGAGAAGATGTTTATTTACTCAACGTCGGTGACAGCCGAGCTGTTTTGGCG CAGAGGAATGAGAGTAACGGGACGAGGAAGAGTCAGGATTTGGGGATGATTACTGAAGAGAGCAGCAGTAATAATGGGTTTGATCAGTTTGAAGACATTG ACGGGGATGAGTTTTTCAGGTTTCAGAATTTGAATTGCGTTCAGCTTACCATGGATCACAGCACCTCCATTGACAAGGAGGTACAGAGGATCAAGAAGGA ACATCCGGACGATCCGAATGCAGTGATGAACGATAGGGTGAAAGGCTATCTCAAAGTCACTCGAGCTTTTGGTGTCGGTTTTCTCAAACAGCAAAAATGG AACGACTTGCTATTCGAGAGGTTCAGGATCGACTACGTGGGGAACTCTCCATACATAACCTGCTTCCCGTCACTATACCACCATAGATTAAGTTTGAAAG ATCGTTTCTTGATACTCTCATCGGACGGTCTCTATCAGTACTTTACGAACGAGCAGGCTGTGTCAGAGGTGGAATCGTTTCTATTTACATTCCCAGAAGG CGATCCTGCTCAGCATTTGATCGAGGAGGTTCTGTTTCGTGCCGCCAAAAAAGCTGGGATGGATTTCCACGAGCTGCTCGACATTCCGCAAGGGGATCGG AGAAGGTACCATGACGATGTTTCGGTGATCATCATTTCTTTCGAAGGTCGGATATGGAGATCTTCTATGTAA
AA sequence Show only first row Show all	>Lus10024397 pacid=23174887 polypeptide=Lus10024397 locus=Lus10024397.g ID=Lus10024397.BGIv1.0 annot-version=v1.0 MGNGVTKVSNCFVSPGDISSRRHDIVVHLGDPLHEGLGHSFCYIRPDPGRISTHHNSKLHSAADETTTFRSISGASVSANTSSTPSTVLTSDSSTSTTFS SGLERASTFESSESFASIPLQPVPRSQPLQLSVPGSGPMERGFLSGPIERGFCSGPIDRAGIYSGPIDHEPAPKHSTSFPLQRSLSHGSFRVVEEDKNDK KSSKKLTRRNLIKKLKRVLSKIPKLKKSIKENSDVANSSAVGSGSSDPEEEEEEEDTSEFSVRSNNLEWAQGKAGEDRVHIVISEEHGWVFVGIYDGFNG PDAPDYLLSNLYNDVQSELKGLLWNENDELPPKGKVNHFDVLRALSRALRKTEEAYFDVADKMAAANPELALMGSCVLAMLMKGEDVYLLNVGDSRAVLA QRNESNGTRKSQDLGMITEESSSNNGFDQFEDIDGDEFFRFQNLNCVQLTMDHSTSIDKEVQRIKKEHPDDPNAVMNDRVKGYLKVTRAFGVGFLKQQKW NDLLFERFRIDYVGNSPYITCFPSLYHHRLSLKDRFLILSSDGLYQYFTNEQAVSEVESFLFTFPEGDPAQHLIEEVLFRAAKKAGMDFHELLDIPQGDR RRYHDDVSVIIISFEGRIWRSSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	1.0	0.9640
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	1.4	0.9508
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	1.7	0.9421
					Lus10025897 [exp]	2.8	0.9350
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	3.2	0.8977
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	3.5	0.9155
AT1G54120			unknown protein		Lus10013152 [exp]	3.5	0.8933
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	5.5	0.9341
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	9.4	0.8620
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	9.6	0.8735

Compare expression of checked genes

Lus10024397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.