Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09410 535 / 0 Pectinacetylesterase family protein (.1.3) AT3G09405 486 / 3e-171 Pectinacetylesterase family protein (.1) AT5G23870 400 / 2e-137 Pectinacetylesterase family protein (.1.2.3) AT3G62060 393 / 2e-134 Pectinacetylesterase family protein (.1) AT2G46930 390 / 2e-133 Pectinacetylesterase family protein (.1) AT5G26670 387 / 5e-132 Pectinacetylesterase family protein (.1.2) AT1G57590 385 / 5e-131 Pectinacetylesterase family protein (.1) AT4G19420 384 / 5e-131 Pectinacetylesterase family protein (.1.2) AT3G05910 380 / 1e-129 Pectinacetylesterase family protein (.1.2) AT4G19410 363 / 4e-123 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025347 [exp] 429 / 5e-150 AT3G09410 250 / 8e-81 Pectinacetylesterase family protein (.1.3) Lus10038024 [exp] 396 / 8e-136 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 387 / 5e-132 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 384 / 1e-130 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10039238 [exp] 377 / 3e-128 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10033301 [exp] 377 / 3e-128 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 374 / 7e-127 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 372 / 2e-126 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 363 / 1e-122 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084900 [exp] 597 / 0 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.014G110900 [exp] 412 / 3e-141 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 404 / 1e-138 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 402 / 6e-138 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 380 / 2e-129 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.012G142300 [exp] 376 / 4e-128 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G234100 [exp] 370 / 3e-125 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.015G145400 [exp] 369 / 4e-125 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 367 / 1e-124 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 344 / 2e-115 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10024398 pacid=23174966 polypeptide=Lus10024398 locus=Lus10024398.g ID=Lus10024398.BGIv1.0 annot-version=v1.0 ATGCCGAATTCCAGGCCAGCAACTTTGTTTCTCTGGTGGAGAAAGTGGGGCAAGAAGGATTGGGCAATCGTCGCCATCGGTATCTCAGTCGTACTCTTCA CTCTGACCCTCCTGTTCGATTCGGGAACCGTGGATCGCCCGACGGCCGGAAACCAGCCGTTCGATGTGCCCATCATCAGCGCCGACGATCCAGTGGAATT GACGTTGCTCCGGAACGCCAAGGACAGAGGCGCACTTTGTTTGGACGGGAGCCCGCCGGGTTACCATTTCCAGAAAGGATTCGGATCCGGATCCCATAAG TGGGTGATTCACATTGAAGGTGGGGGATGGTGCAATACGATCGAGTCATGTTCTTTCCGTTCCAGAACCGCATTGGGTTCGTCCAAGTTCATGGAACCCC AAGTTGCATTCGCTGGAATCCTCAGTCGTGATCCCTCCCATAATCCAGACTTTTTCAACTGGAATAGGGTCAAGATCCGCTATTGCGACGGTGCATCTTT TGCTGGTCATCCTGAAAGCGAGTTGACGAATGGGACCAAACTTTTCTTCAGAGGGCAGCTCATTTGGGAAGCCATTATGGATGAGCTTTTATCTAAAGGA ATGGCCAAAGCTAAGCAGGCTTTTCTCACAGGATGCTCTGCGGGTGGGCTGGCAACTCTGATTCATTGTGATGACTTTCACAATCTTTTGCCCAAGGATG CTCCTGTAAAATGCCTGGCTGATGCAGGTTTTTTCCTCGATGAGAAAGATATTAATGGACAATACACCATGAGATCTTTCTACCGAGACGTTGTGCACCT TCAGGGAGTTGACAAAAGTTTGCATAAGAAATGTATATCCAAATCCGAAACAGACCCATCTGAGTGCCTATTCCCCCGGGAAATCGTAAAAAATGTAAGG ACACCAATATTCCTTGTTCACCCAGGTTATGACTTTTGGCAGATACGAAACATTTTAGTTCCACATGGTTCGGATCCTCGCGGACTTTGGCGTAAATGTA GAATGGGTCTTCAGTACTGCAATTCTTCGCAGATGGAAATACTGCAAGGTTTCCGAACTTCACTGCTGAATCAATTGGCTGATTTCAAGAATAACAAGGA AGGAGGCTTTTTCATAAATTCATGCTTCATACATTGCCAAACATGGTCTTCTCCAACATGGCATTCGCCCTCTTCTCCAAGAATCGACAATAAGCTAAAG AGCGATCCTTTTCAACAGACAATCGCGCAATCAGTCGGAGACTGGTATTTCAACCATCACGAAGTCAAGAAAATCGACTGCCCGTATCCCTGCAACCCCA CTTGTTATAACATGGATTTTGCTCCACATTGA
AA sequence Show only first row Show all	>Lus10024398 pacid=23174966 polypeptide=Lus10024398 locus=Lus10024398.g ID=Lus10024398.BGIv1.0 annot-version=v1.0 MPNSRPATLFLWWRKWGKKDWAIVAIGISVVLFTLTLLFDSGTVDRPTAGNQPFDVPIISADDPVELTLLRNAKDRGALCLDGSPPGYHFQKGFGSGSHK WVIHIEGGGWCNTIESCSFRSRTALGSSKFMEPQVAFAGILSRDPSHNPDFFNWNRVKIRYCDGASFAGHPESELTNGTKLFFRGQLIWEAIMDELLSKG MAKAKQAFLTGCSAGGLATLIHCDDFHNLLPKDAPVKCLADAGFFLDEKDINGQYTMRSFYRDVVHLQGVDKSLHKKCISKSETDPSECLFPREIVKNVR TPIFLVHPGYDFWQIRNILVPHGSDPRGLWRKCRMGLQYCNSSQMEILQGFRTSLLNQLADFKNNKEGGFFINSCFIHCQTWSSPTWHSPSSPRIDNKLK SDPFQQTIAQSVGDWYFNHHEVKKIDCPYPCNPTCYNMDFAPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09410			Pectinacetylesterase family pr...		Lus10024398 [exp]	0	1
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	3.9	0.9135
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	8.1	0.9200
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	15.4	0.9184
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	19.7	0.9115
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	20.7	0.8888
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	20.7	0.9027
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	23.9	0.9143
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	26.5	0.9112
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	27.1	0.9136
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	27.7	0.8895

Compare expression of checked genes

Lus10024398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.