Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37670 805 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 776 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 471 / 1e-151 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 466 / 9e-151 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 279 / 3e-82 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 279 / 1e-81 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64610 243 / 3e-69 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 244 / 5e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 229 / 8e-65 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 96 / 3e-21 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003974 [exp] 1135 / 0 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023797 [exp] 616 / 0 AT5G02430 423 / 7e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027671 [exp] 389 / 4e-122 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 386 / 2e-121 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017312 [exp] 301 / 3e-90 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 300 / 6e-89 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 294 / 1e-86 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 288 / 2e-85 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 270 / 2e-79 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084600 [exp] 962 / 0 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 509 / 1e-165 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 483 / 2e-155 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 343 / 5e-105 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 313 / 1e-93 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 306 / 1e-91 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 299 / 2e-88 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 287 / 3e-84 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 275 / 1e-80 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 271 / 5e-79 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10024399 pacid=23174956 polypeptide=Lus10024399 locus=Lus10024399.g ID=Lus10024399.BGIv1.0 annot-version=v1.0 ATGGGAAAGTCCGTCACCATATCGAATGGATCCGGCCATCCGAAGATGGATCGGAAGCGAACTCTCACCATGAATTGGGACGCCTTCGACGACTACAACG AAGACGACAATTTCTTCGACTGCAATCGTCTCTCCGCCGCCGCTCCTACCGACCTGGCTTCCTCCGGCTCCGACGACGATGACGAGTTCGAAGAATCCCG CGCCTCCTTCTCCACCTCCATCTCCTCTAAAACATTCCGAAACTACTCTTTCGCTTCGGCCGCAACCGCGGCCGCTGCTACCACCGCCATGTCTCCGCAA TACGATATCTGGAAGGCGGCGCCGGGGTCGATCACCGAACGGCGGAAGCGCTTGCTCCAAGGGATGGGACTCGCCGAGGAGAAGGCAATGGCGAAGATGC TCAGCAGAGACTTCTCCCGCGCCGTTACGCGGAAGATCGCCCAAGTGAATGCAGTCGCAGCTGCTAAGGCAGCGGCAATGTCGACGAGATCCACGTCATC ATCGAACCACAATCAACCAGCTCTCGAAGCTCCTTCTACCTCCTTTACGGAAAAATCCGCTCCCGCCAATTCAAAGCACGAGCATACGTCGTCTCAATTA CCGCCGGCGATGATCGTCCGATCGCGATCCGAGAGCGACATTGTATCGCTAACCAGCGATAAGAGGAGGAAAGAGGAGGTGCTTGGATTAGTATCCAAGC AACGGATTACGCGAACCACATCCCTAATCATCGTCTCTCGCGCAGGACGAGTCTGCAGTTACTCGAGCTATCCGGAATCCGTTCGAATCCCTAACAAGGA AATATCACATTCACAATCGAACAGCGACGCCGGTGGTGGTCACCATCGAGGCGCAACGAAATCGGTGGTGCCAAACAACGGACTCGGAGCGTTTTTCCTG ATCAAGAATCTGGATACGGATAAGGAATTCGTAGTCAAAGAGTACGATCAGGACGGACTGTGGAACAAAGTTAGCGATCTTCAAACAGGGAAGCAATTAA CGCTAGAGGAATTCGAGAAATCCGTGGGGCATTCTCCTGTTGTAAAGGAGCTGATGCGAAGGGGAAATGGAAACGATGGAAACGAAAGGAAGCTGGGAGG GAACAACTATTTCTCCAAGAGTTTGAGAATGAGCAAAAAGAGAGGCGCTGCATTTGTAAAGAGCATCAAGGGAGTTGCTCATTCGATGTCGATGAACGCT TCGAAAACCGAGAGGGATAGGGATCTCAGCAATCTTCCTCCAGTATCTGATCAGAAGGGAGGAGGAAGCAACAAGAACAATGCAGCACCGTCAGGATGGA TTAAAGTTAGGTTAACAGGGAAATCTCACAGAGAATTGAGTGCCTTGCATTTGTGTCAAGAGATTCAAGCTCATGAGGGTTCGATTTGGACGTTAAAGTT CAACTCTGATGCACGGTATTTAGCTAGTGGTGGTGAAGATAGAACTATACATGTATGGGAAGTTCAGGAATGTGAAGTGATGTCGTTGCACGAAGGCCAT TTGACTCCTCTTCATCCGTCGGCGTCACCTAGTTTGGGCGAGGCTTTTCCGATGCCATCGCTGAAGAAGAAGAAGAAAGGTTCTGTTAGCAAGAAAGGAA ACCCGATTCCGGAATATGTTCATGTACCGGAAACTGTGTTTGCATTGTCGGAGAAGCCTGTATGCTCCTTCACTGGCCATCTTGATGATGTCCTGGATTT GTCCTGGTCAGGATCTCAGCAACTCCTGTCATCATCAATGGATAAAACCGTGAGATTATGGGATATGGAGACCAAGTGTTGCTTAAAGATGTTTGCTCAT AATGATTATGTAACTTGTATACAGTTTAACCCCATGAACGATCAGTATTTCTTGAGCGGATCACTCGACAACAAAATTCGGATATGGAGTGTTCCGGATA GACAACTTGTGGAGTGGATTGATCTTCATGAAATGGTCACTGCTGTTTGTTACACCCCAGACGGCCAGGGTGCCCTGGTAGGTTCACACAAAGGGACTTG TCGGATGTACAGTTTTGAAGATTGCAAACTTAATCAAACAGACCAGGTTGAAATACAAAGGAAGAAATCCAGTGGGAAGAAAATCACAGGTTTCCAGTTT TCTCCAGGAAACCCGTCTGAGGTGTTAGTGACTTCGGCTGATTCCAGAATACGGATCATGGAAGGGAAAGATTTAATCCACAAATTCAGAGGTTTCAAAA ACGTCAACAGCCAAATAGCAGCGTCATTCAGCTTAAACGGGAAGCACGTGATCTGCGCCAGCGAAGACTCTAATGTATACATCTGGAAGCGAGAAGAAGG CCGCACCGCCGGCACCGGAAAAGGAAAGAGCGCCTCAGCAACCACCACCCGTGGCTTCGAAGCATTCCAATGCAAAGACGTCTCCGTCGCCATACCCTGG CCTGGAATCGTGAAAGGAGACCCTCCGCCAAATCCAATTCCATCTGCCACTACCAAAAGCAAATCGAAACGCATCACCGCCAACTCCCCAACCAAGGAAG ACTCGTCTACCTCCAGTAAAAGGAACCATCAGCATGCGGAGGAAGAGAGTAGTTCTGCTACAGCTTCTAAAAGGCCGCCGCTTCCAAAGAAGAACAACAA AGATGGTACTAACAAAGACGAGAAAGACGAGAATTGTAGTACTGAAGAAGAGGATCACTCCAAGATTTCACGATCGGGATCAGGGGTAGGGGAGTCATTC TCTTCGGCGGCGAAATTGGAGGAATCGTCGTCGACGAAGAGTAATACCAGTTGGTCGGAGCAGGATACGGCGTGGGGGCTTGTGATTGTGGCGGCTACGT CGGACGGTGAGATCAAGGCTTATCAGAACTTTGGCTTGCCACGGAAGATAGGACGCCAGAGCAATCTCTTCTAG
AA sequence Show only first row Show all	>Lus10024399 pacid=23174956 polypeptide=Lus10024399 locus=Lus10024399.g ID=Lus10024399.BGIv1.0 annot-version=v1.0 MGKSVTISNGSGHPKMDRKRTLTMNWDAFDDYNEDDNFFDCNRLSAAAPTDLASSGSDDDDEFEESRASFSTSISSKTFRNYSFASAATAAAATTAMSPQ YDIWKAAPGSITERRKRLLQGMGLAEEKAMAKMLSRDFSRAVTRKIAQVNAVAAAKAAAMSTRSTSSSNHNQPALEAPSTSFTEKSAPANSKHEHTSSQL PPAMIVRSRSESDIVSLTSDKRRKEEVLGLVSKQRITRTTSLIIVSRAGRVCSYSSYPESVRIPNKEISHSQSNSDAGGGHHRGATKSVVPNNGLGAFFL IKNLDTDKEFVVKEYDQDGLWNKVSDLQTGKQLTLEEFEKSVGHSPVVKELMRRGNGNDGNERKLGGNNYFSKSLRMSKKRGAAFVKSIKGVAHSMSMNA SKTERDRDLSNLPPVSDQKGGGSNKNNAAPSGWIKVRLTGKSHRELSALHLCQEIQAHEGSIWTLKFNSDARYLASGGEDRTIHVWEVQECEVMSLHEGH LTPLHPSASPSLGEAFPMPSLKKKKKGSVSKKGNPIPEYVHVPETVFALSEKPVCSFTGHLDDVLDLSWSGSQQLLSSSMDKTVRLWDMETKCCLKMFAH NDYVTCIQFNPMNDQYFLSGSLDNKIRIWSVPDRQLVEWIDLHEMVTAVCYTPDGQGALVGSHKGTCRMYSFEDCKLNQTDQVEIQRKKSSGKKITGFQF SPGNPSEVLVTSADSRIRIMEGKDLIHKFRGFKNVNSQIAASFSLNGKHVICASEDSNVYIWKREEGRTAGTGKGKSASATTTRGFEAFQCKDVSVAIPW PGIVKGDPPPNPIPSATTKSKSKRITANSPTKEDSSTSSKRNHQHAEEESSSATASKRPPLPKKNNKDGTNKDEKDENCSTEEEDHSKISRSGSGVGESF SSAAKLEESSSTKSNTSWSEQDTAWGLVIVAATSDGEIKAYQNFGLPRKIGRQSNLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37670			Transducin/WD40 repeat-like su...		Lus10024399 [exp]	0	1
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	14.5	0.8210
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10043298 [exp]	17.3	0.8141
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	120.6	0.7021
AT3G48120			unknown protein		Lus10004240 [exp]	167.6	0.6913
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	177.1	0.6875
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	213.2	0.6981

Compare expression of checked genes

Lus10024399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.