Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02440 67 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025345 [exp] 272 / 2e-93 AT5G02440 67 / 6e-14 unknown protein Lus10023770 [exp] 117 / 1e-32 AT5G02440 97 / 2e-25 unknown protein Lus10016560 [exp] 68 / 2e-13 AT5G02440 66 / 2e-13 unknown protein Lus10040828 [exp] 65 / 1e-12 AT5G02440 66 / 1e-13 unknown protein Lus10000246 [exp] 47 / 5e-07 AT5G02440 47 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084400 [exp] 160 / 2e-49 AT5G02440 78 / 5e-18 unknown protein Potri.009G030100 [exp] 108 / 5e-29 AT5G02440 98 / 1e-25 unknown protein Potri.001G238900 [exp] 107 / 7e-29 AT5G02440 81 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024400 pacid=23175045 polypeptide=Lus10024400 locus=Lus10024400.g ID=Lus10024400.BGIv1.0 annot-version=v1.0 ATGGCTCACCAACAAGAGGAGCAGCAACAAGAAGATGGTTGGCCGCTGGGGTTGATGAGGCCTGTTAACGCCAGAGTCGGATTGTTGAGGAATCCACATA ATTTCAATGGCTCTATCTCTTTTACTGCTACCACTCTGCTCACTAGGTCTGCAAGCTCCACTACTGACTCTTCTTCAGCTCTTGATACTGAGTCAACTGG GTCGTTCTTCCATGACAAGAGCATCACACTAGGGAGCTTGATTGGGTTCTCCAACATTCTTGAATTGTCAAGAAGATCATCAATACGGGGAAGAGGAGGA AGTTCAGTGAGTTTAAAAGAAGAACAAATGTACATCAACAAGCCAAAACCTTGGATGATCTTCTCATTGTGCTCCAGACTGAGCACTGATGCAGTCAACA GTACCACTAACAACAAATCTCCTTGTCTTGAGCATTTCCTTCAAGTAGAGAGACAAGCTGCCTTGACCACCAGCACACTCTATTACGGGCCTAATGATTT CTCACCAATTGCTACTGATGCTGCTGCTGGAACAATTATGAACTCTCTTTTCATTGGTGGTGAGATTGCTCCACAGAGGTTATTGGAACATGGCACTCGG TATGGATCCCCATCAATACTTTCAGGTCTATGTTGCGGACATATCAATAGCGAAACCAAGATGATATGA
AA sequence Show only first row Show all	>Lus10024400 pacid=23175045 polypeptide=Lus10024400 locus=Lus10024400.g ID=Lus10024400.BGIv1.0 annot-version=v1.0 MAHQQEEQQQEDGWPLGLMRPVNARVGLLRNPHNFNGSISFTATTLLTRSASSTTDSSSALDTESTGSFFHDKSITLGSLIGFSNILELSRRSSIRGRGG SSVSLKEEQMYINKPKPWMIFSLCSRLSTDAVNSTTNNKSPCLEHFLQVERQAALTTSTLYYGPNDFSPIATDAAAGTIMNSLFIGGEIAPQRLLEHGTR YGSPSILSGLCCGHINSETKMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02440			unknown protein		Lus10024400 [exp]	0	1
					Lus10018660 [exp]	1.0	0.9074
AT5G40640			unknown protein		Lus10014575 [exp]	3.5	0.8760
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	3.7	0.8681
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	7.5	0.8599
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	11.6	0.8473
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	12.5	0.8482
AT5G44005			unknown protein		Lus10003609 [exp]	12.8	0.8398
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	12.8	0.8766
AT2G05310			unknown protein		Lus10001175 [exp]	13.5	0.8772
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	14.4	0.8648

Compare expression of checked genes

Lus10024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.