Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 550 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 505 / 5e-179 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 453 / 3e-158 Melibiase family protein (.1.2) AT3G26380 87 / 5e-18 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038325 [exp] 548 / 0 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 547 / 0 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 523 / 0 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 499 / 5e-177 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 461 / 6e-162 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 454 / 2e-158 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10010160 [exp] 452 / 3e-158 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10034218 [exp] 449 / 3e-156 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 381 / 4e-130 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 596 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 553 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 500 / 6e-177 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 498 / 2e-176 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 456 / 3e-159 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.010G048400 [exp] 84 / 4e-17 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 84 / 4e-17 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 74 / 4e-14 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10024401 pacid=23174983 polypeptide=Lus10024401 locus=Lus10024401.g ID=Lus10024401.BGIv1.0 annot-version=v1.0 ATGGCTCATCCGCATCACCATACATCTTGGCGCCTGTCGACGGCGATGGTCCTGCTGCTTGTTGATATCTTCACCGTCGGCGGAGTTGGAGTTGGAGTTG GCGCGGCCGGCGGGAGGAACCTTATTGCTAATGGATTGGGTCTTACTCCTCCTATGGGATGGAATAGCTGGAATCATTTCCAATGTAACATATCGGAGAA GACAATTAAGGAGACAGCTGATGCCATGGTTTCTTCGGGACTCGCAGCATTGGGGTACCACTACATCAACATAGATGATTGCTGGGCTGAACTTAACAGA GATTCTGAGGGGAATATGGTTTCTAAGAATTCGACATTTCCCTCTGGAATCAAGGCCCTGGCTGATTATGTGCACGCCAAAGGCCTCAAGCTTGGAATTT ATTCAGACGCTGGGTCTCAGACTTGCAGCATGCTGATGCCAGGTTCATTAGGCCACGAAGAACAAGATGCCAACACTTTTGCTTCCTGGGGAATAGATTA CTTGAAATATGACAATTGCAACGATGATGGGACGAGCCCAAAAATTAGGTATCCTGTAATGAGCAGGGCACTGTTGAATAGCGGAAGGCCAATCTTCTTT TCTCTATGTGAATGGGGAAGGGAAGATCCAGCAACATGGGCCGGCAGCATTGGCAACAGCTGGAGAACTACTGGGGACATCAGCGATAACTGGGACAGCA TGACTTCTTGTGCAGATAATAACGACCAATGGGCACTTAATGCTGGACCTGGAGGCTGGAATGATCCTGACATGCTTGAAGTTGGGAATGGAGGGATGAC AACCGAGGAATACCGATCCCATTTCAGCATATGGGCATTAATGAAGGCACCTCTTCTTATTGGATGTGACGTTCGGTCGATGAGTAACGACACATACGAG ATTCTAAGCAACAAGGAAGTGATTGCAGTAAACCAAGATAAGCTAGGAGTGCAAGGAAAGAAAGTAAAGAAAGATGGAGATGTGGAGCTGTGGGCTGGAC CTCTGAGTCACGACAGAGTTGCGCTAGTGATGTGGAACAGAGGCTCTTCCAAAGCCACCATCACCGCTCAATGGCCCGACCTCCAACTCAACCTTTCCAC CGCCGTTGATGTCAGAGATTTATGGGCGCACTCAACAATCCATTCAGTGAAAATGGAGATCTCAGCTGATGTGGAGTCTCATGCTTGTAAGATGTTCGTC CTCTCTCCAACAAACCACACTCAGCAACTGGTAACCCAACCGCAAGGCGACCTTTGA
AA sequence Show only first row Show all	>Lus10024401 pacid=23174983 polypeptide=Lus10024401 locus=Lus10024401.g ID=Lus10024401.BGIv1.0 annot-version=v1.0 MAHPHHHTSWRLSTAMVLLLVDIFTVGGVGVGVGAAGGRNLIANGLGLTPPMGWNSWNHFQCNISEKTIKETADAMVSSGLAALGYHYINIDDCWAELNR DSEGNMVSKNSTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSMLMPGSLGHEEQDANTFASWGIDYLKYDNCNDDGTSPKIRYPVMSRALLNSGRPIFF SLCEWGREDPATWAGSIGNSWRTTGDISDNWDSMTSCADNNDQWALNAGPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALMKAPLLIGCDVRSMSNDTYE ILSNKEVIAVNQDKLGVQGKKVKKDGDVELWAGPLSHDRVALVMWNRGSSKATITAQWPDLQLNLSTAVDVRDLWAHSTIHSVKMEISADVESHACKMFV LSPTNHTQQLVTQPQGDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	0	1
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	2.0	0.8993
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	3.7	0.8294
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	7.3	0.8606
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004748 [exp]	14.4	0.8278
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10025467 [exp]	14.7	0.7942
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	15.6	0.8646
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	18.6	0.8056
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	20.5	0.8071
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	21.2	0.8473
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	23.5	0.8077

Compare expression of checked genes

Lus10024401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.