Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19540 644 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 127 / 4e-32 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 113 / 2e-27 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 112 / 9e-27 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 110 / 2e-26 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G29730 98 / 9e-22 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT3G63460 63 / 4e-10 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT4G34460 61 / 4e-10 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT2G43770 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 52 / 6e-07 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025341 [exp] 806 / 0 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 114 / 2e-27 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 113 / 2e-27 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 108 / 1e-25 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 108 / 1e-25 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 103 / 5e-24 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 98 / 1e-21 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 93 / 5e-20 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 86 / 4e-18 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074400 [exp] 679 / 0 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 678 / 0 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 115 / 7e-28 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 113 / 3e-27 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 110 / 2e-26 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 109 / 1e-25 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 106 / 8e-25 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G151800 [exp] 106 / 2e-24 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 104 / 2e-24 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 62 / 1e-10 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10024403 pacid=23174987 polypeptide=Lus10024403 locus=Lus10024403.g ID=Lus10024403.BGIv1.0 annot-version=v1.0 ATGCCATCCATTCCGACAAAGGTCTGGCAACCTGGAGTTGACAAGCTTGAAGAAGACGAGGAGCTTCAGTGCGACCCTTCTGCCTACAACTCCCTTCACG CCTTCCACGTTGGCTGGCCCTGCTTGAGTTTTGATCTCGTTCGTGATTCCCTTGGTTTAGTTCGGACTGAGTTTCCCCACACAGTTTACTTCGTTGCCGG AACTCAAGCAGAGAAGGCTGCTTGGAACTCTGTTGGGATATTCAAACTCTCTAACGTTTCTGGCAAGAGAAGGGAACTTGTCCCTAGCAAAAAAAGTGCT GATGGGGAGTCCGACGGAGATGATGATGATGATGAAGATAGCAGTGATAGTGAAGATGACTCTGAAGATGAGGAAGCTGGTGGATCAAAAGCACCTACTC TACAGATGAGAAGACTGGCTCATGGAGGATGTGTTAATCGCATACGTGCTATGACTCAGAGTCCTCATATTTGCGCAACTTGGTCCGATTCTGGTTATGT ACAGATATGGGATGTCAGTAGTCATCTAAATGCTTTAGCAGAGTCGGAAGCTGATCCAGCAATGAAAGATCCTCCAGTTGTAAATGAAGCCCCACTAGTT AATTTCAAAGGCCACAAGGATGAAGGATACGCCATGGATTGGAGTCCTCATGTTGCTGGAAGGATGGTGACAGGTGATTGCAGGAATTTTATTCATCTGT GGGAGCCCACATCTGGAACATCGTGGAACGTTGATCCTACTCCATTTGTTGGACATATCGCGAGTGTGGAAGATCTGCAGTGGAGTCCGACTGAAGATAA CATCTTTGCCTCTTGCTCTGTCGATGGGACGATAGCATTATGGGACACTCGTCGAGGAAAGACACCAGCTTTACGCTTCAAAGCGCACAATGCTGATGTC AATGTTTTGTCATGGAACAGGCTGGCTAGTGTCATGTTAGCTTCAGGAAGTGATGATGGTACGTTTTCCATCCGTGATCTTAGGCTGCTGAAAGAGAACA TGGACGGTGATACGTCAGTCGTAGCACACTTCGACTACCATAAACACCCGATAACATCGATTGAATGGAGTCATCATGAGGCCTCCACGTTAGCTGTCTC ATCAGCAGACAATCAATTGACGATATGGGATCTGACACTGGAGAGAGACGAGGAAGAGGAAACAGAGTTTAAAGCTCAAACAAAAGAGCAAGTAAATGCT CCTGCAGATATACCGCCTCAGCTTCTCTTTGTCCATCAGGGACAGAAGGATTTGAAGGAGCTGCACTGGCATTCTCAGATTCCGGGGATGATAATGTCAA CTGCTTCAGATGGTTTCAATGTTTTGATGCCTTCCAACATACAGTCTACTCTCCCTTCAGATGGCAGTTAG
AA sequence Show only first row Show all	>Lus10024403 pacid=23174987 polypeptide=Lus10024403 locus=Lus10024403.g ID=Lus10024403.BGIv1.0 annot-version=v1.0 MPSIPTKVWQPGVDKLEEDEELQCDPSAYNSLHAFHVGWPCLSFDLVRDSLGLVRTEFPHTVYFVAGTQAEKAAWNSVGIFKLSNVSGKRRELVPSKKSA DGESDGDDDDDEDSSDSEDDSEDEEAGGSKAPTLQMRRLAHGGCVNRIRAMTQSPHICATWSDSGYVQIWDVSSHLNALAESEADPAMKDPPVVNEAPLV NFKGHKDEGYAMDWSPHVAGRMVTGDCRNFIHLWEPTSGTSWNVDPTPFVGHIASVEDLQWSPTEDNIFASCSVDGTIALWDTRRGKTPALRFKAHNADV NVLSWNRLASVMLASGSDDGTFSIRDLRLLKENMDGDTSVVAHFDYHKHPITSIEWSHHEASTLAVSSADNQLTIWDLTLERDEEEETEFKAQTKEQVNA PADIPPQLLFVHQGQKDLKELHWHSQIPGMIMSTASDGFNVLMPSNIQSTLPSDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	0	1
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	3.2	0.9536
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	6.5	0.9334
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	7.9	0.9512
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	8.8	0.9400
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	9.9	0.9424
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	10.5	0.9373
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	10.6	0.9388
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10039847 [exp]	10.7	0.9135
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	15.7	0.9406
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011956 [exp]	15.7	0.8953

Compare expression of checked genes

Lus10024403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.