Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37585 445 / 1e-154 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 401 / 3e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 400 / 6e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 397 / 3e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 387 / 1e-130 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 381 / 1e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 377 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 365 / 1e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 354 / 8e-119 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 343 / 3e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025339 [exp] 733 / 0 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 431 / 5e-148 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 425 / 8e-146 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 388 / 4e-131 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 386 / 2e-130 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 381 / 8e-129 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 380 / 4e-128 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10031626 [exp] 371 / 2e-124 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 369 / 1e-123 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263000 [exp] 521 / 0 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 422 / 1e-144 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 404 / 9e-138 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 392 / 3e-133 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G145500 [exp] 389 / 2e-131 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 383 / 3e-129 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 382 / 4e-129 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 382 / 5e-129 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 354 / 1e-118 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 347 / 7e-116 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10024404 pacid=23174881 polypeptide=Lus10024404 locus=Lus10024404.g ID=Lus10024404.BGIv1.0 annot-version=v1.0 ATGGCTAGTTCTATAATTTTTGTTCCGATCACCAAACATTTCAACCGCAGCCGACTCGCAAACACACTCCCGCCGGCGACGGAATCCAACATCCTCCACC CAATCAGGCTAATTTCTGCCGGAAACCCACCAGTATCCAAAAGGCACAATTTTTCCCCAATGAAGCGATATCACCACACGACGGATCGGAAATGGCTAGT GCCATTGGCCGCGCTAGGAGCTCTCTGCTGCATTTTCCTCCTAACTGTTGGCCGAGCCAAGTATCCGGAAGCGGGAAAGGCGACATCATCTTCGTCGTCC TCCAGCGAATTGAGATCCAGCAGCTTCTCCTCCGATGGTAATTTGGGTGACCCGTTGACGCTTCCGAAGCTACCCAGATTCGCTTACTTCATATCGGGGG CAAAGGGGGAAGTAGATCAGGTGAAACGTCTCCTTCAGGCGGCGTACCACCCAAGGAATTACTACTTGCTGCATCTGGATCTCGAAGCTTCCGACACTGA GAGGCTCGAGCTGGCCAAGTATGTGAAATCATCGGCGGCGATCAGAACATTTGGGAATGTGATGGTGATTGGTAAGGCGGATTTGGTTACTTATAGAGGA CCTACGACGATCGCCTTCACGCTTCATGGGATTGCAGTGTTGTTGAAGATCGCCGTGGATTGGGACTGGTTTGTCAATTTGAGCTCCTCGGATTATCCCT TAATGCCTCAAGATGATATTCTCCACATGTTCTCTTACTTGCCGAGAGACTTGAACTTCCTAGAGCACACAAGCAGTATTGGATGGAAAGAGTTCCATAG AGCCCGGCCTATAATCATAGATCCAGGGCTGTATAATTCGAAGAAATCGGGTGTATTTTCGGCAAAGGAGAAGAGATCAATGCCTGCTTCTTTCAAACTA TTCTCAGGTACTACTGATTGGATTAGCGGTGGATATTTTTATGCTGTATCAGCATTGGCAAGGTCAAGGTTCTTGCTTTGTTCTTTGGTGTATCTTCACA GCTTTAATAATGGCTTCAGAGGTTCAGAATGGGTGGTGCTAAGCAGATCATTTCTGGAGTTCTGCGTGTGGGGATGGGACAATCTGCCACGAACCCTCCT AATGTATTACACCAACTTCCTGGCATCCGAAGAGGGCTACTTCCACACAGCGGTCTGCAACCACAAAGATTTCCAGAACACTACGGTCAACCACGACCTG CACTACATAACCTGGGATAACCCTCCGAAGCAAAACCCAGTATCCTTAACCTCGGAGCACCTCCGAGACATGGTGGCTAGTGGTGCGCCTTTTGCCCGCC GGTTCGAGAAGGGAGATGGGGTGCTGGACAGAATCGATAGGGAGCTTTTGGGGAGAGCGAGTAATGGTTTCACACCTGGAGGTTGGTGTAGAGACACTTC TTGTGGTGTTTATGGGAGTCCGGATGTTATAAAGCCAAGTGTAAGTTCAAAGAGGCTAGAGAAGCTACTGCTGAGACTTCTTGATCCTGAAAGTTTCAGG TCTACACAGTGTAAATAA
AA sequence Show only first row Show all	>Lus10024404 pacid=23174881 polypeptide=Lus10024404 locus=Lus10024404.g ID=Lus10024404.BGIv1.0 annot-version=v1.0 MASSIIFVPITKHFNRSRLANTLPPATESNILHPIRLISAGNPPVSKRHNFSPMKRYHHTTDRKWLVPLAALGALCCIFLLTVGRAKYPEAGKATSSSSS SSELRSSSFSSDGNLGDPLTLPKLPRFAYFISGAKGEVDQVKRLLQAAYHPRNYYLLHLDLEASDTERLELAKYVKSSAAIRTFGNVMVIGKADLVTYRG PTTIAFTLHGIAVLLKIAVDWDWFVNLSSSDYPLMPQDDILHMFSYLPRDLNFLEHTSSIGWKEFHRARPIIIDPGLYNSKKSGVFSAKEKRSMPASFKL FSGTTDWISGGYFYAVSALARSRFLLCSLVYLHSFNNGFRGSEWVVLSRSFLEFCVWGWDNLPRTLLMYYTNFLASEEGYFHTAVCNHKDFQNTTVNHDL HYITWDNPPKQNPVSLTSEHLRDMVASGAPFARRFEKGDGVLDRIDRELLGRASNGFTPGGWCRDTSCGVYGSPDVIKPSVSSKRLEKLLLRLLDPESFR STQCK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	0	1
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	1.4	0.9364
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	5.5	0.9359
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	6.0	0.9171
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	9.0	0.9256
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	11.2	0.9033
AT3G07080			EamA-like transporter family (...		Lus10022798 [exp]	12.0	0.8905
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	12.4	0.9194
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	14.0	0.9104
AT4G25670			unknown protein		Lus10014961 [exp]	16.4	0.9087
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	19.0	0.9109

Compare expression of checked genes

Lus10024404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.