Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17905 89 / 2e-21 ATL4H RING/U-box superfamily protein (.1) AT5G05280 79 / 1e-18 RING/U-box superfamily protein (.1) AT5G17600 78 / 3e-17 RING/U-box superfamily protein (.1) AT2G27940 76 / 3e-17 RING/U-box superfamily protein (.1) AT1G72220 77 / 8e-17 RING/U-box superfamily protein (.1) AT5G66070 74 / 2e-16 RING/U-box superfamily protein (.1.2) AT3G03550 75 / 3e-16 RING/U-box superfamily protein (.1) AT1G04360 74 / 6e-16 RING/U-box superfamily protein (.1) AT1G23980 74 / 7e-16 RING/U-box superfamily protein (.1) AT2G18650 74 / 1e-15 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025338 [exp] 271 / 4e-94 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10005954 [exp] 92 / 3e-22 AT3G04020 111 / 7e-28 unknown protein Lus10029456 [exp] 78 / 5e-19 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10012745 [exp] 77 / 6e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10020859 [exp] 76 / 1e-16 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10041859 [exp] 74 / 2e-16 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10028406 [exp] 74 / 2e-16 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10033515 [exp] 74 / 5e-16 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10013618 [exp] 74 / 7e-16 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 90 / 4e-23 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 91 / 9e-22 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 87 / 2e-20 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 82 / 7e-20 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 84 / 1e-19 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 81 / 2e-19 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 82 / 8e-19 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 78 / 2e-18 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 80 / 9e-18 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 76 / 1e-16 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024405 pacid=23175035 polypeptide=Lus10024405 locus=Lus10024405.g ID=Lus10024405.BGIv1.0 annot-version=v1.0 ATGGCCGGAGACGATGGCCACGGCGGCGGGCCGGACGTCAGCCCTCTGATGATCGGAATCCTCGGGATGCTGGCCGGAGCCATAGCCGTGGCGACCTACC ACTGCATTGCCGTCGGCTGCTACCAAATGCACTCCCCCGATCCCCCGAGGGCAGACGAGAGGGGGAATAATGCTGCGTCGACGACGGAGAGAAGCCAGGA AGTGAGCAGCGGGAGCAGCATGAGCACGAGCAATTCGTCGGCGGCGCTGATTCCGGTGGTGAGGTACACCAAGGAGTGGAGGAGCGAGGCCACGTGTCCG GTTTGCCTGTCGGATTTCAATGAAGGGGAGCCGGTTCGGTCGTTGCCCGCTTGCTCGCATGTGTTCCACGTGGCGTGCATCGACAGGTGGCTTATCTGTC ATTCCAATTGCCCGGTTTGTAGGGCTAATGCGGTGTCGGTTGCCCACGTGGCGCTGACTGTGCCCGATATGCATGCGATGAGGGATGGAAGCCGAGCTGT GCAAGGGAGATCGATTAGTTACTATGTTGGGTAG
AA sequence Show only first row Show all	>Lus10024405 pacid=23175035 polypeptide=Lus10024405 locus=Lus10024405.g ID=Lus10024405.BGIv1.0 annot-version=v1.0 MAGDDGHGGGPDVSPLMIGILGMLAGAIAVATYHCIAVGCYQMHSPDPPRADERGNNAASTTERSQEVSSGSSMSTSNSSAALIPVVRYTKEWRSEATCP VCLSDFNEGEPVRSLPACSHVFHVACIDRWLICHSNCPVCRANAVSVAHVALTVPDMHAMRDGSRAVQGRSISYYVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	0	1
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	1.0	0.8388
					Lus10016514 [exp]	2.0	0.7766
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	2.4	0.7641
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	6.3	0.7242
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	11.8	0.7479
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	13.0	0.5887
					Lus10011908 [exp]	14.5	0.6665
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	19.4	0.6716
					Lus10031737 [exp]	25.0	0.6008
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	25.1	0.6020

Compare expression of checked genes

Lus10024405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.