Plant FIBer expression Database

Lus10024406 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37570 717 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
AT5G02480 582 / 0 HSP20-like chaperones superfamily protein (.1)
AT3G12570 567 / 0 FYD FYD (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025337
[exp]
922 / 0 AT2G37570 789 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Lus10023420
[exp]
569 / 0 AT3G12570 730 / 0.0 FYD (.1.2.3.4)
Lus10040301
[exp]
556 / 0 AT3G12570 731 / 0.0 FYD (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G054100
[exp]
603 / 0 AT3G12570 721 / 0.0 FYD (.1.2.3.4)
Potri.010G206400
[exp]
602 / 0 AT3G12570 716 / 0.0 FYD (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10024406 pacid=23174882 polypeptide=Lus10024406 locus=Lus10024406.g ID=Lus10024406.BGIv1.0 annot-version=v1.0
ATGGAGAATCATCATCCTTCAACCCTCTTGTCCATGGATTCAAGTGCTTCTTCCTCTCACGATGAATTGGATTTGGAGATGAGTCGTCAAATTGTGCCTC
CTGATATCAACCTGCCTTTCTCCACAGAGCGTAGTCCTCCTCCTCCTCCACCACAGTTATGGAACTCAGACCCTTGTGATCTGCTAGATGTTGGACTTGC
TCCTCAAGTTTACGACACCGAGAGTTACCTTGCAGTTGCTCCTAAAGTCGGCCGGAAATGCGCCAAACGGCTCGACAGCATATGGGGTGCCTGGTTTTTC
TTCAGCTTCTACTTTAGGCCAGCGCTGAACGAGAAATCAAAGGCCAAGGTTGTCAGGGATAACAACGGAGTGTCTGGATTTGACAAGTCTGATCTCAAGC
TTGATGTTTTCATGGTGCAACACGACATGGAGAACATGTACATGTGGGTGTTCAAGGACAGGCCAGAGAATGCTCTCGGTAAGATGCAGTTGAGGAGTTA
CATGAACGGTCATTCTCGCCAAGGCGAGCGTCCTTTCCCCTTTTGTGCCGATATGGGCTTCGTTCGATCCCACCGGATGCAAAGGAAGCACTACAGAGGA
CTGTCGAATCCGCAATGTGTTCATGGTATTGAGGTGGTTCCCTCACCTAATCTCTCGTGTATCGACGAGGACGAGAGGAAGAGATGGACCGAACTGACCG
GCCGGGATGTCAACTTCACCATCCCGCCCGAAGCCAGTGATTTTGGCTCGTGGAGAAACCTCCCCAATACGGATTTCGAGCTCGAGAGGCATCCTCCTGC
TTTGAAAAATAGTAACTCGACGAAGCTTCTCAATGGTCATAGCAATGGCGATTCGAAGAAGCTGCTCAATGGAAACGGTCTGAATCTGTCGACTCAACCA
TCAAACCATAGCAATGGTGGGGATGCAATGGATTTGTCACCGAGCAGCAAGAGAAGGAAGGACTTGTTTCCACACGATGAGGAGTGTTATTTGTCCGTCA
ATCAACCTTCATCAGCCGAAATGAATGAGCGGCCATGGTTGAACGGGTTTGGAGGGGTGATGAAGAATGTCTGTGGAGGGCCGGTGACAGCTGCAAAAAC
GATATACGAAGACGAAGAAGGATACTTGATAATCATGACATTGCCATTTGTTGATCTGCACACTGTGAAGGTGTCGTGGAGGAACACTTTGAGTCACGGG
ATAATAAAAGTGTCGTGTGTGAGCACGTCTAGGATGCCGTTGATCAAGAGACTCGATCGGACGTTCAAGCTGACGGATGCGGCATCGGAGCATTGTCCGC
CTGGGGAGTTTGTGAGGGAGATTCCGCTGTCGACAAGAATCCCTGAAGATGCGAAACTGGAAGCCTACTACGATGGACCGGGGACAGTGCTGGAGATTCT
GGTGCCGAAACTCAGGGAAGGGCGGGTAGAGCATGAGGTGCGGATCTGCCTGAGGCCTCACCTTGGCGGGAATGATCTTATGTTGACCTGA
AA sequence
>Lus10024406 pacid=23174882 polypeptide=Lus10024406 locus=Lus10024406.g ID=Lus10024406.BGIv1.0 annot-version=v1.0
MENHHPSTLLSMDSSASSSHDELDLEMSRQIVPPDINLPFSTERSPPPPPPQLWNSDPCDLLDVGLAPQVYDTESYLAVAPKVGRKCAKRLDSIWGAWFF
FSFYFRPALNEKSKAKVVRDNNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKDRPENALGKMQLRSYMNGHSRQGERPFPFCADMGFVRSHRMQRKHYRG
LSNPQCVHGIEVVPSPNLSCIDEDERKRWTELTGRDVNFTIPPEASDFGSWRNLPNTDFELERHPPALKNSNSTKLLNGHSNGDSKKLLNGNGLNLSTQP
SNHSNGGDAMDLSPSSKRRKDLFPHDEECYLSVNQPSSAEMNERPWLNGFGGVMKNVCGGPVTAAKTIYEDEEGYLIIMTLPFVDLHTVKVSWRNTLSHG
IIKVSCVSTSRMPLIKRLDRTFKLTDAASEHCPPGEFVREIPLSTRIPEDAKLEAYYDGPGTVLEILVPKLREGRVEHEVRICLRPHLGGNDLMLT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37570 SLT1 sodium- and lithium-tolerant 1... Lus10024406
[exp]
0 1
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Lus10034702
[exp]
1.4 0.8628
AT4G10770 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10028445
[exp]
1.4 0.8570
AT1G69510 cAMP-regulated phosphoprotein ... Lus10030448
[exp]
5.0 0.8227
AT4G31270 Trihelix sequence-specific DNA binding ... Lus10026986
[exp]
6.5 0.8171
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Lus10019444
[exp]
6.7 0.7937
AT4G04955 ATALN allantoinase (.1) Lus10025648
[exp]
7.3 0.7775
AT4G24380 unknown protein Lus10020946
[exp]
8.7 0.7813
Lus10022348
[exp]
8.8 0.7964
AT1G63900 DAL1 DIAP1-like protein 1, E3 Ubiqu... Lus10008163
[exp]
8.9 0.8026
AT5G06570 alpha/beta-Hydrolases superfam... Lus10008439
[exp]
9.2 0.7921

Lus10024406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.