Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10480 282 / 2e-97 PEP, PAS2 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) AT5G59770 79 / 1e-17 Protein-tyrosine phosphatase-like, PTPLA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025335 [exp] 361 / 9e-127 AT5G10480 267 / 2e-89 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Lus10040862 [exp] 72 / 3e-15 AT5G59770 235 / 5e-78 Protein-tyrosine phosphatase-like, PTPLA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010900 [exp] 298 / 5e-104 AT5G10480 368 / 4e-131 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Potri.001G235400 [exp] 71 / 8e-15 AT5G59770 241 / 3e-80 Protein-tyrosine phosphatase-like, PTPLA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04387 [flax] [poplar] PTPLA Protein tyrosine phosphatase-like protein, PTPLA
Representative CDS sequence Show only first row Show all	>Lus10024408 pacid=23175007 polypeptide=Lus10024408 locus=Lus10024408.g ID=Lus10024408.BGIv1.0 annot-version=v1.0 ATGGCCGGATTTCTCTCTGTGCTCAGGCGCATATACCTCTCCCTGGCTCAGGTGTTGTACCTAGCTGTGAAGACTTTGAATGAATCAGGTTATGAACATG TGTACAGTGCAATCGAGAAGCCCCTCCACCTAGCTCAAACTGCTGCAATTTTGGAGATTCTGCACAGTGTCGTGGGGTTAATCCGCTCTCCGATATCAGC AACGCTCCCACAGATTACTTCAAGACTGTATCTCACATGGATCGTCTTGCATAGTTTTCCTGAGGTTCAGACTCACTTCCTTGTTAGCAGTTTGGCTATT AGTTGGGCAATCACAGAGATTATTCGTTATTCATTCTTCGGCTTGAAGGAAGCTTTTGGTTCGACACCTTCATTTCTTTTGTGGCTCAGGTATAGCACCT TTTTGGTGATGTATCCCGTTGGTATCAGCAGTGAAGTTGGTCTAATTTATCTCGCCTTGCCTCACATGAAGGCTTCTGATAAGTTCTGCATAAGAATGCC GAACAAATGGAACTTCTCATTCGATAACTTCTGTGCCGCGATTCTTTCTATCGGAATCTATATTCCAGGCATGGTCTCCTCACCTGTACGGTTACATGCT TAG
AA sequence Show only first row Show all	>Lus10024408 pacid=23175007 polypeptide=Lus10024408 locus=Lus10024408.g ID=Lus10024408.BGIv1.0 annot-version=v1.0 MAGFLSVLRRIYLSLAQVLYLAVKTLNESGYEHVYSAIEKPLHLAQTAAILEILHSVVGLIRSPISATLPQITSRLYLTWIVLHSFPEVQTHFLVSSLAI SWAITEIIRYSFFGLKEAFGSTPSFLLWLRYSTFLVMYPVGISSEVGLIYLALPHMKASDKFCIRMPNKWNFSFDNFCAAILSIGIYIPGMVSSPVRLHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	0	1
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	1.0	0.9000
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	3.2	0.8539
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	3.9	0.8461
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	5.3	0.8392
AT1G12330			unknown protein		Lus10024559 [exp]	7.4	0.8384
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	7.7	0.7798
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	8.7	0.7399
AT1G74160			unknown protein		Lus10021148 [exp]	15.5	0.8224
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	18.2	0.8086
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	19.0	0.7707

Compare expression of checked genes

Lus10024408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.