Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28780 481 / 2e-158 unknown protein AT3G09450 457 / 2e-149 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025334 [exp] 1343 / 0 AT3G09450 466 / 4e-154 unknown protein Lus10005903 [exp] 518 / 2e-172 AT2G28780 720 / 0.0 unknown protein Lus10040846 [exp] 488 / 1e-159 AT2G28780 680 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082000 [exp] 690 / 0 AT2G28780 555 / 0.0 unknown protein Potri.001G237300 [exp] 608 / 0 AT2G28780 785 / 0.0 unknown protein Potri.009G028600 [exp] 589 / 0 AT2G28780 761 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF04632 [flax] [poplar] FUSC Fusaric acid resistance protein family
Representative CDS sequence Show only first row Show all	>Lus10024409 pacid=23174893 polypeptide=Lus10024409 locus=Lus10024409.g ID=Lus10024409.BGIv1.0 annot-version=v1.0 ATGACATCTTCAGCTCCAACCAAAGAGCTCTGGCTGAAGCGTTTCTACTCGGCACTAAGAACTGTGGTAGCCTGCACAATAGTCGGCACCACGGCCCTTT ACGGTCCTCATCCGGTCCGTAAACTCGTGGCCTTTCCAGCCTTCTCTTACGTCACGACCATTTTGATTGTGTCTGACGCCTCTCTGGGAGGCGTCATCAG AGGCGCCTTCTGCGCTCTATACGCCACCGTCCAAGTGATGGCCACTTCGGCTCTCACGTTGTGGCTGGTGGGACCCGAGAGGTTCGCCCGCAGCAGCGAA GGCGCTGCTGCGGCGGCAGTGGCAGTTACTGCGTTTGTGGTGGCGCTGCCGAGGTCGACCCCGCTGCTGGCCAAGCGGATAGCCTTCGGGCAGATTGTAA TCGTGTACGTGGCTACGGTGGTGCATGGGGAGGAGATTGACAGGAATGTGTGGGTCGTGATGGACCCGGTTCGGGTTGCTGCCAGTACTGGTTTGGGTGT TGTGGCTTCTCTTCTAGCTGTGTTGCTTCCTTTCCCTCGTCTTGGCTATTATGAGGCGAAGCAAACGTGCAAATCATACGTCGAGAATGCTTCAGAGCGA TTAAATCTCCTCCTGGAGGCCTTCACCTCCCAAGATAATCAAATTGCTTCCGACAAGATTTCACTGTCGAAAATCCTGTCTGTTAAAGGAGCCAAGCATC TTCAATCCATCACAGAGATTTACGGAGCGATGAAATGGGAGAAATTTCTGAGGCCTAAGTCATGCTGCATAGACCCAGCAGTGAGTTTGAACGACGTCCA AACCACAATCCGAGGAATGGAACTTGCTCTTTCTTATGTCCGTTCATTTCCTATTGCCGTGATGGACGGTGAGCTTAAAGAGGAATCGGTCAGGATGCGT GTCAGAATCGGTCTCAAGCTGGAACAAGCCAAGTGCCTTACGAGTTCTGATTCGGCGACAGCTCCAGAAACAGCTGCAGATGTATCAAATGGCTACAACT GGCAGAAGAAAATCTATAACGCGACCCAGGAGGAATCCCGTCTACCGGTTTTCTTCTTTCTATACTGCATGGAGCTTCTCCAAGGAGGGATGAAGATGGA GGAAGTAAAGAACATAGAGGTCGAGGTATCAGAGAAAAAAACTGGGACGATTCTGCAGAAGATATGGAATGATATGGCTCTAGTGCTAAGAAGAGAACGG TGGACATTTGCAGTCAAATGTTCACTCTCACTGGGGTTTGCAGTGCTGCTCGGGTTGATATACGACAAAAGAAACGGCTACTGGTCAGGATTAACAATTG CCATCAGCTTCGTCACGGGGAGGCAAGCTACGTTCACTCTCGCCAATGCACGTGCCCAAGGGACGGCGATGGGATCGGTGTACGGAATCCTCTGCTGCTT CCTGTTCCGTGATCTGGTTAACCTGAGATTCCTTCTCGTACTCCCTTGGATCGTTTTCGCTAGCTTTCTTAGGCACAGCAAGATGTATGGTCAGGCAGGC GGGGTTTCGGCTGTTATTGGTGCATTGTTAATCTTAGGCAGGAAAAACTACTATGGAACTCCGAGCGAATTCGCGATCGCGAGAATCACAGAAGCCTGCA TAGGATTGATCTGCCTTCTTGCGGTTGAATTCCTGTTACAGCCAGCAAGAGCTGCAACTCTTGCAAGAACACAGACTGCTTGGGTGTTAGCAGAAATGAG GGACGCCATAGAATCTGTCGTACTACTACCCACCGACAGAAAAACGTCGATCTCCTCAAGTATGACAAAGGGAGATACATGCAACAGGCTGGAATCATAC GTCAACAAACTGGAGCAGTTCATCCTAGAAGCAGAAGCAGAGCCTAATTTCTGGTTTTTGCCCTTTCACGGCGCTTGCTACGCTAAATTGTTAGGAGCGC TAAGAAATATGAGCGATCTCTTACGATTTATCTCCTGCGAGACAGAAATGTTCTTGCAAGGAGCAGAAAAGCTAGGACTGGACAGCAAGAAGCTAGGAGA CATAAATGGCGATCTAGACCTTTTCCGAGAGAAGGTCAGCTCTACCGTGAAATGCTTACAAGAGGTCATTTCCATCAAATCCCTCCAAGATCTGAAAAAC ATGTCTCAGCAGCCATCTTACGACATTGAGTTAGGAAAACCACCAGCAGGTGATAAATCCAAGACATTGGGGCCTGATGAAGAAACAGTATCTGAAATGG TGAATTGTATCCTCCAACACATAAAGGAGTTGGGCAACAGCATCGACGCCTCTGAAGCAGAGCAAAAGCTCAAAAGTCGGATGACTCTTAGCCTAAGTAC GCTAGGGTTCTGCATCAATGGTTTGATGAGAGAAATAGCAGAGGTTGAGAAGCAAGTAAAAGAACTGATTGCATGGGAGAACCCTAGAAAACAAGTTGAT TTGTATGATATCTATTGTAAAATAAATACACTTCATATAAGAAAATAA
AA sequence Show only first row Show all	>Lus10024409 pacid=23174893 polypeptide=Lus10024409 locus=Lus10024409.g ID=Lus10024409.BGIv1.0 annot-version=v1.0 MTSSAPTKELWLKRFYSALRTVVACTIVGTTALYGPHPVRKLVAFPAFSYVTTILIVSDASLGGVIRGAFCALYATVQVMATSALTLWLVGPERFARSSE GAAAAAVAVTAFVVALPRSTPLLAKRIAFGQIVIVYVATVVHGEEIDRNVWVVMDPVRVAASTGLGVVASLLAVLLPFPRLGYYEAKQTCKSYVENASER LNLLLEAFTSQDNQIASDKISLSKILSVKGAKHLQSITEIYGAMKWEKFLRPKSCCIDPAVSLNDVQTTIRGMELALSYVRSFPIAVMDGELKEESVRMR VRIGLKLEQAKCLTSSDSATAPETAADVSNGYNWQKKIYNATQEESRLPVFFFLYCMELLQGGMKMEEVKNIEVEVSEKKTGTILQKIWNDMALVLRRER WTFAVKCSLSLGFAVLLGLIYDKRNGYWSGLTIAISFVTGRQATFTLANARAQGTAMGSVYGILCCFLFRDLVNLRFLLVLPWIVFASFLRHSKMYGQAG GVSAVIGALLILGRKNYYGTPSEFAIARITEACIGLICLLAVEFLLQPARAATLARTQTAWVLAEMRDAIESVVLLPTDRKTSISSSMTKGDTCNRLESY VNKLEQFILEAEAEPNFWFLPFHGACYAKLLGALRNMSDLLRFISCETEMFLQGAEKLGLDSKKLGDINGDLDLFREKVSSTVKCLQEVISIKSLQDLKN MSQQPSYDIELGKPPAGDKSKTLGPDEETVSEMVNCILQHIKELGNSIDASEAEQKLKSRMTLSLSTLGFCINGLMREIAEVEKQVKELIAWENPRKQVD LYDIYCKINTLHIRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28780			unknown protein		Lus10024409 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	1.0	0.9728
AT3G09450			unknown protein		Lus10025334 [exp]	1.4	0.9687
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	3.0	0.9354
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	3.7	0.9040
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	3.9	0.9166
AT5G05180			unknown protein		Lus10034251 [exp]	4.9	0.9221
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	4.9	0.8812
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	6.0	0.8918
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	6.5	0.9101
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	6.6	0.8843

Compare expression of checked genes

Lus10024409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.