Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02510 146 / 7e-44 unknown protein AT5G32440 134 / 7e-38 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 117 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025332 [exp] 517 / 0 AT5G02510 152 / 4e-46 unknown protein Lus10039988 [exp] 149 / 2e-43 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 142 / 1e-40 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 137 / 8e-39 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 135 / 8e-38 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10026000 [exp] 99 / 2e-24 AT1G80040 121 / 1e-33 unknown protein Lus10014293 [exp] 94 / 8e-23 AT1G80040 129 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 164 / 3e-49 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.006G066000 [exp] 158 / 4e-47 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 102 / 2e-26 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10024410 pacid=23174902 polypeptide=Lus10024410 locus=Lus10024410.g ID=Lus10024410.BGIv1.0 annot-version=v1.0 ATGTCGGCTGGGATTTGCGGGAAGCGGATGGGGTTCGAGGAGATATTCGGATCTCCATCTTCTTATTCAGCTAAGAGATCCAGGTGTTCCGGTTTTGGAT CTCCTACCCGATCGCCCGAATCCGGATCCGATGACAAGGTTCTCACCTTGCTCCAGATGTTTCCTGGTTTAGATCCTGAGAGTATCAAAAGAGCTCTTTG GGAGAACAATAACAAGATTGACGATGCAATCGAGAGCTTGCGGGGAAGTTCGTTTCATGCCGCCATGGATAGAAACAACAGGGGCAGCATTGATGATCCT GCCATCATTGGGAACTGCGATGCTGTTCATTCTCCAAGTACGTCTACTGGCATACTGAAGGGAGAACAAGTCATTGATGGATCCAAATGGGTGGATCTCT TTGTACAAGAGATGAACACTTCGGCCGATCTAAATGACGCCAGGAGGCGAGCTGCGACGATCCTAGAAGTTTTCGAGAAGTCTATAGCTTCTTCTCAGTC AAGGGAATCGAAGGAGAAAGAGATGGAGAATGCAGCGCTCAGGAATCATCTGCAGGGTTTGGTTAGTGACAACCAAATCTTGAAGAGAGCCGTTGCGATC CAGCACGACCGCAACTTGGAGCAGGAAGAGAAAGCAAAGGAAGTGCACAACGTAAAGGTTGTGTTAAACCAGTATCAAGAGCAAATTCGAAGCTTGGAGC TAAGCAACTATGCTCTGAAGCTCCATTTACAAAGAGCCCAACACAGTAGCAGCTCGTTTCCAGGACACTTCCCTCCAGACATCTGTTGA
AA sequence Show only first row Show all	>Lus10024410 pacid=23174902 polypeptide=Lus10024410 locus=Lus10024410.g ID=Lus10024410.BGIv1.0 annot-version=v1.0 MSAGICGKRMGFEEIFGSPSSYSAKRSRCSGFGSPTRSPESGSDDKVLTLLQMFPGLDPESIKRALWENNNKIDDAIESLRGSSFHAAMDRNNRGSIDDP AIIGNCDAVHSPSTSTGILKGEQVIDGSKWVDLFVQEMNTSADLNDARRRAATILEVFEKSIASSQSRESKEKEMENAALRNHLQGLVSDNQILKRAVAI QHDRNLEQEEKAKEVHNVKVVLNQYQEQIRSLELSNYALKLHLQRAQHSSSSFPGHFPPDIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02510			unknown protein		Lus10024410 [exp]	0	1
AT4G16060			unknown protein		Lus10016832 [exp]	4.9	0.7372
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10012592 [exp]	13.0	0.7196
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	13.0	0.7988
AT5G13340			unknown protein		Lus10035960 [exp]	14.0	0.7927
AT4G04955		ATALN	allantoinase (.1)		Lus10025648 [exp]	18.0	0.7173
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	18.5	0.6923
AT4G32920			glycine-rich protein (.1.2.3)		Lus10000229 [exp]	19.7	0.7177
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	19.9	0.7229
AT3G07910			unknown protein		Lus10039527 [exp]	21.2	0.7522
AT5G07960			unknown protein		Lus10034695 [exp]	22.1	0.7520

Compare expression of checked genes

Lus10024410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.