Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37830 2189 / 0 OXP1 oxoprolinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025331 [exp] 2504 / 0 AT5G37830 2219 / 0.0 oxoprolinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091000 [exp] 2251 / 0 AT5G37830 2153 / 0.0 oxoprolinase 1 (.1) Potri.017G124400 [exp] 443 / 1e-145 AT5G37830 414 / 2e-135 oxoprolinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF05378 [flax] [poplar] Hydant_A_N Hydantoinase/oxoprolinase N-terminal region CL0108 [flax] [poplar] Actin_ATPase PF01968 [flax] [poplar] Hydantoinase_A Hydantoinase/oxoprolinase CL0108 [flax] [poplar] PF02538 [flax] [poplar] Hydantoinase_B Hydantoinase B/oxoprolinase
Representative CDS sequence Show only first row Show all	>Lus10024411 pacid=23175000 polypeptide=Lus10024411 locus=Lus10024411.g ID=Lus10024411.BGIv1.0 annot-version=v1.0 ATGGGGCGTGTCAATGAAGAGAAGCTCAGGTTTTGCATCGACAGAGGAGGCACATTTACAGATGTCTATGCCGAAATCCCTGGCAAGACTGACGGCCGAG TTCTGAAACTTCTGTCCGTCGACCCTGCAAACTACGATGATGCTCCGGTGGAAGGAATCCGCAGGATTCTTGAAGACTACACTGGCTCAAAGATCCCTCG CCATACTAAAATCCCTACGGATAAGATAGAGTGGATCAGGATGGGTACAACAGTGGCTACCAATGCATTGTTGGAGAGAAAGGGCGAAAGGATTGCTCTC TGTGTCACCAAGGGTTTCAAGGATCTGCTACAGATCGGCAACCAGGCTCGTCCCAGTATCTTCGACCTTACTGTATCGAAACCTTCGAATCTGTATGAGG AGGTTATCGAAGTTGATGAGAGAGTTCAGCTTGTTATTGATATGGAGGACACATCATCAGAATCAGTTGTTCAAGGAGTTTCAGGCGAGTTTGTCAGGGT TGTGAAACCGCTTGACGAATCAGCCTTGGAGCCTCTATTGAAACCTTTGCTTGAGAAAGGGATAAGCTGTTTGGCTGTAGTTTTGCTGCATTCTTATACT TTCCCTGAACACGAGCTACTTCTCTCTAAGGTAGCTTTAAGTATGGGTTTCAAACACGTTTCTTTGTCGTCGGCTTTGACCCCAATGGTTCGAGCTGTTC CTCGTGGTCTAACAGCAAGTGTTGATGCCTACTTAACCCCAGTCATTAAAGAGTACTTGTCAGGGTTTATATCTAAATTCGATGAAGGGTTGGGAAAAGT GAATGTTTTATTTATGCAATCAGATGGAGGGCTCGCACCAGAAAGCAGATTCTCAGGGCACAAAGCTGTTTTGTCTGGTCCTGCTGGTGGAGTTGTTGGT TACTCCCAAACCCTTTTCGGACTTGAAACTGAGAAGCCTCTCATTGGCTTTGACATGGGAGGTACGTCAACTGATGTTAGCCGTTATGCTGGGAGTTACG AACAAGTTCTCGAAACTCAGATTGCCGGTGCTATTATACAGGCGCCTCAGCTAGATATCAACACTGTTGCTGCTGGTGGAGGATCCAAGTTAAAGTTCCT ATTTGGAGCGTTCAGGGTAGGACCGGAATCTGTTGGTGCACATCCAGGTCCGGTTTGCTACCGAAAAGGTGGAGAATTGGCAGTCACTGATGCCAATCTC ATTCTAGGATATGTGATTCCTGATTATTTTCCTGCCATCTTTGGCCCCAATGAAGATCAACCGTTAGATATCCAAGCAACAAGAAAACAATTTGGGGATC TTGCTGGACAGATAAACTCATACAGAAAGAGCCAGGATTCAAATGCAAAAGATATGTCAGTGGAAGAGATTGCTCTTGGCTTTATCAATGTTGCAAATGA GACCATGTGTCGCCCGATAAGACAGTTGACCGAGATGAAGGGGCATGAGACGAGGAATCATGCTCTGGCATGCTTTGGAGGTGCTGGCCCTCAACATGCT TGCGCCATTGCTAGATCTCTGGGAATGAAAGAAGTGCTGGTTCATAGATTTTGTGGGATACTAAGTGCTTATGGCATGGGATTAGCAGATGTCGTCGAGG AGGCTCAAGAGCCATACTCTGCTGTATATGGACCGGACTCCATCTCAGAGGCTTCCCGCAGAGAAAGTATGTTACTAAAGCAGATAAAAGATAAACTACG GGAGCAAGGTTTCAAAGAGGAAAATATAACAACGGAAACCTATTTGAATTTAAGGTATGAAGGTACTGATACAGCCATAATGGTGAAAAATGTACACAAA GATGGATCCGTAAGTGAATATGATGCTGAATTTGTGAAGATGTTCCAGCAAGAGTATGGATTCAAGTTACAGAACCGGAACATTCTAGTTTGTGACGTAA GGGTTCGTGGTATTGGAGTTACGAACATACTAAAGCCACGAGTCGAAGAACCTGCTTCCGGTAAACCGAAAATCGAAGGTCAATACCGGGTTTACTTTGG AGAAGGATGGCACCAGACACCTCTTTTCAGGCTCGAGAATCTGGGTTCCGGACATTCGATCCCCGGCCCTGCAATCATCATGAACGGAAACAGCACGGTG ATAGTCGAGCCGAAATGCAAAGCGATCATTACGAAATATGGAAACATCAGGATAGAAATCGAGTCCGGTGCGGAAACTATAAAAATCGCTGAGAAAGTTG CAGATGTCGTCCAGCTCTCAATTTTCAATCACAGGTTTATGGGGATAGCCGAGCAGATGGGACGGACGTTGCAAAGAACGTCGATCTCGACGAACATAAA GGAACGATTAGACTTCTCTTGCGCTCTATTCGGTCCAGACGGCGGTCTGGTTGCTAACGCCCCTCACGTCCCAGTACATCTCGGAGCTATGTCCAGCACG GTCCGGTGGCAGCTGAATCACTGGGGTAACAACTTGAGCGAAGGTGATGTATTAGTCACGAATCATCCTTGCGCGGGAGGTAGCCATCTCCCCGACATTA CAGTTATAACTCCGGTTTTCGAGAAAGGGAAGCTCTTCTTCTTCGTGGCGAGCAGAGGCCACCATGCCGAAATCGGAGGTATTACTCCCGGTAGCATGCC GCCATTTTCGAAATCGATATGGGAAGAAGGGGCAGCGATCAAAGCGTTTAAGCTCGTGGAAAAGGGGGTTTTCCAAGAAGATGGGATCGTCAAGCTTCTT CAGTTCCCTGGTTCTGATGATTCGGTTCATAAAATCCCTGGAACGAGACGCCTTCAAGATAATCTCTCCGATCTACGTGCACAGATAGCTGCGAATCAGA GAGGAATTGTCCTAATCAAAGAGCTGATCGAGCAATACGGATTGGAGACTGTTCAGGCTTACATGACTTATGTTCAACTGAATGCTGAAGAAGCCGTTCG AGAAATGCTCAAGACCATGGCTGCAAAGGTCTCATCATCCGGTCCGGATAACAGCAAAAACTCGATCGTGACCATCGAAGAAGAAGATTTCATGGACGAC GGCTCCACAATACATCTGAAGCTCGAAATCGACGGGGAAAAAGGCGAAGCATCGTTCGACTTCAGCGGGACGAGTCCGGAAGTGTACGGAAACTGGAATG CACCGGAAGCTGTAACGGCAGCAGCAGTCATCTACTGCCTACGCTGCTTGGTCAACGTCGACATCCCTCTGAACCAGGGGTGCTTAGCTCCGGTCAAAAT CCACATACCTCCGGCATCGTTCCTTTCGCCAAGCGACAAAGCAGCCGTCGTGGGAGGCAATGTTTTAACGTCACAACGAGTGACAGATGTCGTCCTCACA GCGTTCCAGGCCTGCGCTTGCTCTCAGGGGTGTATGAACAACCTCACGTTCGGGGACGAAACGTTCGGCTACTACGAAACGATCGGAGGCGGAAGCGGCG CCGGACCGACGTGGGAAGGGACGAGCGGGGTGCAGTGTCATATGACCAACACGAGGATGACCGATCCAGAGATTTTCGAGCAGAGGTATCCTGTTGTGCT GCACAGGTTCGGGATGAGGGAGAAGAGTGGTGGAGAGGGAGTTCATAAGGGAGGAGATGGGATTGTGAGGGAGATCGAGTTCAGGAGGCCGGTTGTGGTG AGTATTCTCTCGGAGAGGCGAGTTCATTCTCCGAGAGGTTTGGCCGGTGGAAAGGATGGATCTCGCGGTGCGAATTATTTGATTAGTAAAGATGGAAGGA GGATTAATTTGGGAGGTAAGAACACTGTTGAGGTTGAAGCTGGTGAGATTCTGCAGATACTAACGCCTGGTGGTGGTGGATGGGGTTCTCCTTCATAA
AA sequence Show only first row Show all	>Lus10024411 pacid=23175000 polypeptide=Lus10024411 locus=Lus10024411.g ID=Lus10024411.BGIv1.0 annot-version=v1.0 MGRVNEEKLRFCIDRGGTFTDVYAEIPGKTDGRVLKLLSVDPANYDDAPVEGIRRILEDYTGSKIPRHTKIPTDKIEWIRMGTTVATNALLERKGERIAL CVTKGFKDLLQIGNQARPSIFDLTVSKPSNLYEEVIEVDERVQLVIDMEDTSSESVVQGVSGEFVRVVKPLDESALEPLLKPLLEKGISCLAVVLLHSYT FPEHELLLSKVALSMGFKHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFISKFDEGLGKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVG YSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKLKFLFGAFRVGPESVGAHPGPVCYRKGGELAVTDANL ILGYVIPDYFPAIFGPNEDQPLDIQATRKQFGDLAGQINSYRKSQDSNAKDMSVEEIALGFINVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHA CAIARSLGMKEVLVHRFCGILSAYGMGLADVVEEAQEPYSAVYGPDSISEASRRESMLLKQIKDKLREQGFKEENITTETYLNLRYEGTDTAIMVKNVHK DGSVSEYDAEFVKMFQQEYGFKLQNRNILVCDVRVRGIGVTNILKPRVEEPASGKPKIEGQYRVYFGEGWHQTPLFRLENLGSGHSIPGPAIIMNGNSTV IVEPKCKAIITKYGNIRIEIESGAETIKIAEKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSST VRWQLNHWGNNLSEGDVLVTNHPCAGGSHLPDITVITPVFEKGKLFFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGVFQEDGIVKLL QFPGSDDSVHKIPGTRRLQDNLSDLRAQIAANQRGIVLIKELIEQYGLETVQAYMTYVQLNAEEAVREMLKTMAAKVSSSGPDNSKNSIVTIEEEDFMDD GSTIHLKLEIDGEKGEASFDFSGTSPEVYGNWNAPEAVTAAAVIYCLRCLVNVDIPLNQGCLAPVKIHIPPASFLSPSDKAAVVGGNVLTSQRVTDVVLT AFQACACSQGCMNNLTFGDETFGYYETIGGGSGAGPTWEGTSGVQCHMTNTRMTDPEIFEQRYPVVLHRFGMREKSGGEGVHKGGDGIVREIEFRRPVVV SILSERRVHSPRGLAGGKDGSRGANYLISKDGRRINLGGKNTVEVEAGEILQILTPGGGGWGSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	0	1
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	1.0	0.9284
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	1.7	0.9051
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	4.0	0.8918
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	9.5	0.9225
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	12.8	0.8890
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	15.2	0.8438
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	16.3	0.8481
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	22.4	0.8461
AT1G03910			unknown protein		Lus10035558 [exp]	30.9	0.8787
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	36.8	0.8600

Compare expression of checked genes

Lus10024411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.