Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37560 437 / 4e-154 ATORC2 origin recognition complex second largest subunit 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025330 [exp] 608 / 0 AT2G37560 485 / 3e-172 origin recognition complex second largest subunit 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094800 [exp] 506 / 0 AT2G37560 537 / 0.0 origin recognition complex second largest subunit 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04084 [flax] [poplar] ORC2 Origin recognition complex subunit 2
Representative CDS sequence Show only first row Show all	>Lus10024412 pacid=23174897 polypeptide=Lus10024412 locus=Lus10024412.g ID=Lus10024412.BGIv1.0 annot-version=v1.0 ATGGATATAAACGACGGCGAAGAAGAAGAGGAGGAGGTCGAGTTCTCAAGGAATTACTTCCTGTCGAAAGAGCTTAGCGGCTCTAGTAAGAAATCCAGCC GCAAGATCTCCGATATTGATCCAGTAGACGAGCAGGAGCTAAGAACGGCCGCCGCCGACATCAAACCAAAACATGAAAGGGAGATCATCTCACTTATGGA GAACTACAAGAAATCGTACCCTGACTGGGTTTTTATGCTCAGGAGTGGATTTGGACTTCTGATGTATGGATTTGGTTCTAAGAAGGAACTGATTGAAGAT TTCGCTTCTTCAGCATTGACTGAGTATTCCGTTGTAGTAATCAATGGATACGTTCAATCAATCAATCTCAAGCAGGTTATGGTAGCATTAGCTGAAGTTT GGTGGGAACAACTCAAGGCTAAGAGAAGGAACTCCTCCTCGTCCAAGGTTCACCAGCCGTATAATTCTCGATCGGTGGACGATATTCTCTCGTTTTTGGA TGGACAAGAGGGAGATGATGATGACCTCTCCTTTGTCTGTGTCATTATTCACAACATTGATGGTCCCGGGTTAAGAGAACCTGAAAGTCAGCAGCTTCTT GCACGGATCGCTTCGTGTTCTCACATCCGCTTGGTTGCCTCGATTGACCATGTCAATTCTCCACTCCTATGGGACAAGAAGATGGTCCACACGCAGTTTA ACTGGTACTGGTATCATGTTCCTACCTTCACACCATATACAGTTGAAGGAACGTTCTTCCCGCTGATACTTGCACACAGTAGCACAGCCCAGAGCACTAA GACTGCTGCAATAGTATTGCAGAGTTTGACTCCCAATGCCCAGAGCATGCCGATAGATAATTTGTATGCAGCCTCGAGAGAACAGTTCTTCGTGTCTAGC CAGGTGACATTGAACTCTCATTTGACGGAGTTCAAAGATCATGAGTTGATTAAGATGAGAAGGAATGGCGATGGTCAAGACTGCGTCTATATTCCTCTTG CCCGTGATGGATTGCAAAAATTGCTCGAGGAGATCAATTAA
AA sequence Show only first row Show all	>Lus10024412 pacid=23174897 polypeptide=Lus10024412 locus=Lus10024412.g ID=Lus10024412.BGIv1.0 annot-version=v1.0 MDINDGEEEEEEVEFSRNYFLSKELSGSSKKSSRKISDIDPVDEQELRTAAADIKPKHEREIISLMENYKKSYPDWVFMLRSGFGLLMYGFGSKKELIED FASSALTEYSVVVINGYVQSINLKQVMVALAEVWWEQLKAKRRNSSSSKVHQPYNSRSVDDILSFLDGQEGDDDDLSFVCVIIHNIDGPGLREPESQQLL ARIASCSHIRLVASIDHVNSPLLWDKKMVHTQFNWYWYHVPTFTPYTVEGTFFPLILAHSSTAQSTKTAAIVLQSLTPNAQSMPIDNLYAASREQFFVSS QVTLNSHLTEFKDHELIKMRRNGDGQDCVYIPLARDGLQKLLEEIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	2.4	0.8443
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	4.9	0.8272
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	5.5	0.8330
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	6.6	0.8599
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	7.7	0.8389
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	8.1	0.8380
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	9.9	0.8531
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015021 [exp]	14.3	0.7790
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	14.5	0.8311
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	15.0	0.8153

Compare expression of checked genes

Lus10024412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.