Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 182 / 5e-57 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 167 / 1e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G66260 118 / 1e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 116 / 3e-31 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT3G10400 57 / 1e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G36660 55 / 2e-08 PAB7 poly(A) binding protein 7 (.1) AT3G08000 50 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 52 / 2e-07 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G37220 50 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G23350 50 / 5e-07 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025329 [exp] 272 / 4e-92 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 182 / 4e-57 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005445 [exp] 180 / 8e-56 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10004946 [exp] 179 / 1e-55 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10000446 [exp] 134 / 2e-37 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 133 / 3e-37 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10023417 [exp] 116 / 3e-31 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 95 / 2e-22 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040299 [exp] 63 / 3e-11 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 221 / 3e-72 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 190 / 4e-60 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.004G087000 [exp] 134 / 7e-38 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.017G129900 [exp] 134 / 9e-38 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G208000 [exp] 130 / 1e-36 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 102 / 7e-27 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 59 / 3e-10 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.014G157300 [exp] 54 / 3e-09 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G177000 [exp] 56 / 5e-09 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 56 / 8e-09 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10024413 pacid=23174923 polypeptide=Lus10024413 locus=Lus10024413.g ID=Lus10024413.BGIv1.0 annot-version=v1.0 ATGTCGACCGCCCTGGACATGTCTCTCGAAGATATCATAAAGGCCAACAAGAAGTCCAAGACCTCTTCTTCTTCTTCTTCTTCTTTTAGAGGCAAACCTC CTCGCTCCGCCGGTCCTGGCCCTAGCCGCCGTGGCCCCTCCAATCGCGCCGCCAACAGATCCGCTCCATACTCCAAGCCGCCGCAAGCTCCGGAATCTAC CTGGCAACATGACAAGTTCTCCGACGCTTCCGGCGCCGTAGCCTCTGGCCGAGGCTCCCGTGCCGGAGCCCTCGAGACTGGGACTAAGATCTATATCTCC AACTTGGATTATGGAGTTTCCGAAGATGATATCAAGGAGCTTTTCTCAGAAGTCGGTGACATGAAGCGTTACACGGTTCATTACGATAGGAGTGGGAGAT CAGAGGGAACTGCTGAAATTGTATTTGCACGCCGAGAAGATGCTATTGCGGCTGTCAAGAGGTATAATAATGTACAACTTGATGGGAAGCCAATGAAGAT TGAGATGGTTGCAAAGAATGTTGCTGCTGCTCCTGCTCCTGCTCCATCCACAGACGGCTTCAGTCGCAATCAGAATGGTGGCAGCAGAAGGCAAGGAAGG GGCCGCTCTACTGGAGGGTCACGCGGCGGCAGTGGTAGTGGTCGTGGAGGTAGGGGTGGTAAGGGACGAGGTAGAGGCCGAGCTGAAAAGGAGAAGGTGT CGGCGGAGGATCTTGATGCCGATTTGGAGAAGTACCACTCGGGAGCGATGCAAGAAGACTAG
AA sequence Show only first row Show all	>Lus10024413 pacid=23174923 polypeptide=Lus10024413 locus=Lus10024413.g ID=Lus10024413.BGIv1.0 annot-version=v1.0 MSTALDMSLEDIIKANKKSKTSSSSSSSFRGKPPRSAGPGPSRRGPSNRAANRSAPYSKPPQAPESTWQHDKFSDASGAVASGRGSRAGALETGTKIYIS NLDYGVSEDDIKELFSEVGDMKRYTVHYDRSGRSEGTAEIVFARREDAIAAVKRYNNVQLDGKPMKIEMVAKNVAAAPAPAPSTDGFSRNQNGGSRRQGR GRSTGGSRGGSGSGRGGRGGKGRGRGRAEKEKVSAEDLDADLEKYHSGAMQED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	0	1
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	1.4	0.8468
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	2.0	0.8241
AT3G07640			unknown protein		Lus10036423 [exp]	3.7	0.7556
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023844 [exp]	4.9	0.7813
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	8.3	0.7885
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	10.8	0.7748
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	11.3	0.7748
AT3G11640			unknown protein		Lus10000027 [exp]	13.0	0.7558
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10027808 [exp]	13.7	0.7442
AT1G01730			unknown protein		Lus10030384 [exp]	14.0	0.7855

Compare expression of checked genes

Lus10024413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.