Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53720 511 / 2e-174 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT5G41610 285 / 4e-88 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 284 / 3e-87 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT2G13620 274 / 2e-83 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT4G23700 256 / 1e-76 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 246 / 7e-73 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G05580 192 / 1e-53 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 168 / 5e-45 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G52080 154 / 5e-40 CHX28 cation/hydrogen exchanger 28 (.1) AT1G16380 147 / 8e-38 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025324 [exp] 704 / 0 AT3G53720 432 / 3e-143 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017540 [exp] 280 / 2e-85 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10028748 [exp] 270 / 2e-85 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 275 / 6e-84 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017541 [exp] 269 / 3e-80 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10030013 [exp] 262 / 1e-78 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 261 / 7e-78 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 257 / 6e-77 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10004932 [exp] 190 / 2e-52 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054700 [exp] 566 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.010G005200 [exp] 290 / 2e-89 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 290 / 2e-89 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.001G096320 [exp] 282 / 2e-86 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 282 / 2e-86 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 270 / 6e-82 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G105200 [exp] 251 / 1e-74 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 189 / 4e-52 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 189 / 5e-52 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.007G102700 [exp] 173 / 1e-46 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024414 pacid=23174927 polypeptide=Lus10024414 locus=Lus10024414.g ID=Lus10024414.BGIv1.0 annot-version=v1.0 ATGGCTATGGATAAATGCCAAGTTGGTGACGTAGTTCCTCAGGCATTGGAAAATGAAATCATCGTCCTTAATGATGAGACATTTGCCATTCTAGTCCTCA TGGCACTTTTCACAACCTTCATCACCACTCCATCAGTGATGCTCATCTACAAACCAGCCCGCCTCGGCCGTGCCGGAAGCAGCCGCGTAGAAGGAGGGAC CACCACCTCCTCCAATTCAGGCAGCCCCCGAAGAAAGCTCCGTGACCTAACGGCCACCAAGGAATCCAAAGACGAGCTAAGAATGCTCGCCTGCGTCCAC GGCCCTGGCAACGTCCCTTCAATCATCACCCTCGTTGAATCAATTCGCAGCACCAAAATCTCCCAACTCAAACTCTTCGTCATGCACCTTGTCGAGATGA CCGACCGATCTTCTTCCATCATCATGGTCCAACGGGCCCGCAAAAACGGCTTCCCTTTCTTCAACCGGCGCCGTGCGGGCCAGTGGCACGACAGGCTTTC CGGAGCCTTCCAAGCCTACAGCCAACTGGGCCGAGTCACTGTCCGGCCTACTACCGCGATCTCACCCCTCGCGACCTTGCACGAGGATGTCTGCCACGTG GCGGAGACGAAACGTGTGGCCATGATCATCCTTCCGTTCCATAAGCACTGGAGCGACGAAGCGATTGAGAATGTTGGGCATGGCTGGAGGGGAGTCAACC AGAGGATTCTGAAGCACGCGCCTTGTTCTGTTGGGCTGCTTGTTGATCGTGGACTGGGCCAGGATACTGGGTCCAATACTAAAGTGGGCCAGAAAGTTTG TATTGTGTTTTTTGGCGGGCCGGACGATCGTGAGGCGCTGGAGTTGGGCGGGAGGATGGCCGAGCATCCGGCGGTTAAAGTAACGGTCGTTAGATTCGTT GAGAAGGAAGGGGTAGAGGAGAACGGAAAGGCCGTGACTTTACAGCCGTCGCGGTCTAAGTCGTCAGAGCAGAATTATAGCTTCTCTACTGCCGTTATGA ACCGCAAGAAGGAACAGGCAAGTAATTCTTATCCCAACATAACTTGCATACAAAACGGACAGGGTGGAAATTTGGAGCTAGATGAGATGGCTGTGGCCGA GCTCCGAAGCAAATGGGGGGAGGATGTGGAGTACATAGAGAAGCCAGCGAGCAACAACATTATAGAAGGGGTATTGTCGATGGGGAAGAGCAGAGATTAC GATCTTATGGTGGTCGGAAAGGGGCGGTTCCCATCGACAATGGTGGCAAAAATAGCGGACCAACAGGCGGAGCATGCGGAGTTGGGGCCCATTGCCGACG TGCTAGCGTCCTCCAGGCACGGCGTCATTTCATCTGTGCTTGTGATTCAGCAACACGATGTGGCCCATGCAGAGGAAGTTCCGGTGGTTAAGATTGTTGA GAACGATGGGGCCACGTCGTCATCTCAGGGAGAGATGGGGAATAGTATTGTATAA
AA sequence Show only first row Show all	>Lus10024414 pacid=23174927 polypeptide=Lus10024414 locus=Lus10024414.g ID=Lus10024414.BGIv1.0 annot-version=v1.0 MAMDKCQVGDVVPQALENEIIVLNDETFAILVLMALFTTFITTPSVMLIYKPARLGRAGSSRVEGGTTTSSNSGSPRRKLRDLTATKESKDELRMLACVH GPGNVPSIITLVESIRSTKISQLKLFVMHLVEMTDRSSSIIMVQRARKNGFPFFNRRRAGQWHDRLSGAFQAYSQLGRVTVRPTTAISPLATLHEDVCHV AETKRVAMIILPFHKHWSDEAIENVGHGWRGVNQRILKHAPCSVGLLVDRGLGQDTGSNTKVGQKVCIVFFGGPDDREALELGGRMAEHPAVKVTVVRFV EKEGVEENGKAVTLQPSRSKSSEQNYSFSTAVMNRKKEQASNSYPNITCIQNGQGGNLELDEMAVAELRSKWGEDVEYIEKPASNNIIEGVLSMGKSRDY DLMVVGKGRFPSTMVAKIADQQAEHAELGPIADVLASSRHGVISSVLVIQQHDVAHAEEVPVVKIVENDGATSSSQGEMGNSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	0	1
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	1.0	0.9580
					Lus10018015 [exp]	1.4	0.9286
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	5.2	0.8932
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	5.5	0.8734
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	6.3	0.8285
AT2G19130			S-locus lectin protein kinase ...		Lus10031597 [exp]	7.3	0.8127
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	9.4	0.8816
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	9.5	0.8403
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	11.2	0.8808
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041647 [exp]	12.2	0.7593

Compare expression of checked genes

Lus10024414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.