Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37520 822 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 773 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 484 / 2e-156 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 473 / 2e-151 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 176 / 5e-45 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 172 / 5e-44 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 171 / 1e-43 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 154 / 5e-38 PHD finger transcription factor, putative (.1) AT5G13660 147 / 3e-37 unknown protein AT5G59830 143 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025315 [exp] 1638 / 0 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 517 / 1e-166 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 480 / 6e-156 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 281 / 6e-81 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10006110 [exp] 200 / 1e-52 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 195 / 4e-51 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 193 / 2e-50 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 172 / 9e-44 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10024426 [exp] 149 / 4e-38 AT5G59830 231 / 1e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083600 [exp] 954 / 0 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 489 / 4e-159 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 484 / 5e-157 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 477 / 2e-154 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 459 / 3e-147 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.010G087700 [exp] 204 / 5e-54 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 197 / 1e-51 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G118600 [exp] 174 / 9e-45 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.009G016832 [exp] 157 / 7e-44 AT2G37520 149 / 1e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G392801 [exp] 164 / 3e-41 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10024419 pacid=23174967 polypeptide=Lus10024419 locus=Lus10024419.g ID=Lus10024419.BGIv1.0 annot-version=v1.0 ATGGAAGTAGATAAGAAAATTAGTACTGAAATTGAATCGGAGGATGCAGATACTCCAGTGCCTAAGGATATCAAAGCAGAATCGCTTCCTGGTAAGGAGG AGCAGGTGAAAGAAGTGAAAGATGCTTCGTATGAGGACATGACGTCTGAAGTTTCCAACCCAGTCATTTCTCCAAGGGAGAATGTCTCTGCTTGCCTGGG CACTATCAGCCCCAGCACCAAACCATTGGGTTCGATCGAATTGATGTCTCATTCTTCAGGCTCTTCCAGCCCGTCTGAGACTTTGAGTGAGGATGGGGAT CCCTGCAGTGAAAACAACAATGCAGTTGGGTGCAATAACTCTGCCAACGATTCCTCTAGTGCATTCTCCACTACCCACGTTGTGTTGGAGATTCCTAAGG ATGCGATCAGTTCATCTGGGATTAGGAAGATTACTTTTAAGTTCAGCAAAAGGAAAGAGGACTATCATAGTCCGGCCGCTGCTCCTTCAGATCTCGAGCC TGTGAACTATGGCTATGTTCACGAATCATCATATCCTGAGGAATATGGTAGGTCCGAATGGACTGATTCGGATCTCTACATGTCTGGAAGGCAAGATGCA TACTCGTTCATGCCCGCTATGGAAACAACCATGCCTAAGAAACTTTTAGCCAACTATCCAACAAATGTGAAGAAGCTGCTTGCGACAGGAATCCTTGATG GGGCTCGAGCCAGATATATCTCTTTCTCTCCAGAGAGAGAGCTAGAGGGGGTCATAGCAGGTGGTGGATATCTCTGTGGCTGTTCTTTTTGCAATTTTTC AAAGGTTCTCAGTGCATACGAGTTTGAGCAGCATGCTGGTGTTAGGAGCAGGCATCCAAACAGTCACATATATTTGGATAACGGCAAGCCTATCAGCAGT GTTATTCAGGAGATCAAAGCCGCACCGTTTAGTGAAATTGAGGAGGTGATAAGAAATGTGGTTGGTTCGTCACTCAACGAGGAGTTCTTCCAGATCTGGA TAGCTGGTTTCCAACAAGGATTGGAAATGGATGAGGAAGAGGCCTATTGTTTCAAAAAGCCTAGCTACTTACTACATTCTGATGTCAGCTGCTCTAGTCA AGCTATTGATGAAAGCTTGTGGACTGGCTATGGCTCTTATGCGGATAACAGCTCAATCGGACAGCAGCCCTACTTTCCGACGTCTGGGAAAAAACAGTCC AAGAAGCGAGCTCGAGACAATGCTTCTACCTCTGTTAGGAAACATAGTTCAAAAAGAAGGGATAATGATCTTCATCGATTACTTTTCATGCCAAATGGCC TGCCTGATGGAGCTGAATTGGCTTACTTTGTGAAAGGACAGGAAATGTTGAGTGGCTACAAGTTGGGAAGTGGTATATATTGTAACTGCTGTAAGAGAGA GATAAGTCCGTCACAATTTGAAGCTCATGCTGGGATGGCTGCTAGGCGGCAGCCCTATCGTCACATCTATACTTCCAATGGAGTAAGCCTTCATGATATA GCCATTGCATTGTCAAATGGACAGAATCTTGTTACTGGCATCAGTGATGATATGTGTGCAAAATGTGGAGATGGAGGGAATCTTGTGTATTGTGACAATT GCCCTCAGGCTTTTCATCAAGCATGCTTAGAGCAACAGTTTCCAGAAGGTGTTTGGCATTGTCCAGACTGCAAGGATGTTGGCCCTGAAGAGAATTTAGC TAGAACAAATGTCATCAGGTTGAAGCGAGTTGTTCAAAACCCTGAATATGATGTTGGTGGTTGTGTTGTTTGCAGGTCTCGTGATTTTATTGCTGGTACA TTTGATGACCGGACAGTTATCTTCTGTGATCAGTGTGAGAGGGAATTCCATGTTGGTTGTTTGCGGGAGCGTGGACTTTGCGATCTAAAAGAAATCCCTG AAGGAAAATGGTTCTGTTGTAACGAGTGTTATCGGGTTTATCTCGCTCTGCAGAAGTCAATTTCTAGTGGAGTGCAGACAGTATGTGCTTCACAGCTAGA TATCATATGTCGAAAACATGCTGAAAGAGGGTTGAATATCGATAGAGCTAACGTCCAATGGCACATTCTGATGGGAAAAGAACGCCGCGAGGAAGATCTT CCCTTTCTCTCAAAAGCTACTTCAATTTTTCGAGAGTGTTTCGATCCCATAAAAGCAAGAAAAGGCCGGGATCTCATTCCTCTTATGGTTTACGGGAGGA ATATATCTGGGCAAGAATTCCAGGGGATGTATTGCGTTGTTCTGACCGTAAAGAACACTGTTGTTTCTGCTGGTCTTCTTAGAATCTTCGGCAGCGAGGT TGCAGAACTTCCTCTAGTTGCAACTAGTCGAAAGCATCAAGGGAAAGGTTACTTCCAAGCCCTCTTTTCTTGCGTCGAGAGATTTCTGTGCTCGCTGAAA GTGGAGAGCCTGGTCCTTCCAGCTGCTGAGGAAGCTGAGTCGATCTGGACCAAAAGATTCGGGTTCGAGAGGATGACTGCTGAAAATTGGGCAGCTTACT CGAAGGAATTTCAGCTGACGATATTCGGTGGCACATCAATGCTGGAGAAGAAGGTGCCGCAGGAAATCGAGTGA
AA sequence Show only first row Show all	>Lus10024419 pacid=23174967 polypeptide=Lus10024419 locus=Lus10024419.g ID=Lus10024419.BGIv1.0 annot-version=v1.0 MEVDKKISTEIESEDADTPVPKDIKAESLPGKEEQVKEVKDASYEDMTSEVSNPVISPRENVSACLGTISPSTKPLGSIELMSHSSGSSSPSETLSEDGD PCSENNNAVGCNNSANDSSSAFSTTHVVLEIPKDAISSSGIRKITFKFSKRKEDYHSPAAAPSDLEPVNYGYVHESSYPEEYGRSEWTDSDLYMSGRQDA YSFMPAMETTMPKKLLANYPTNVKKLLATGILDGARARYISFSPERELEGVIAGGGYLCGCSFCNFSKVLSAYEFEQHAGVRSRHPNSHIYLDNGKPISS VIQEIKAAPFSEIEEVIRNVVGSSLNEEFFQIWIAGFQQGLEMDEEEAYCFKKPSYLLHSDVSCSSQAIDESLWTGYGSYADNSSIGQQPYFPTSGKKQS KKRARDNASTSVRKHSSKRRDNDLHRLLFMPNGLPDGAELAYFVKGQEMLSGYKLGSGIYCNCCKREISPSQFEAHAGMAARRQPYRHIYTSNGVSLHDI AIALSNGQNLVTGISDDMCAKCGDGGNLVYCDNCPQAFHQACLEQQFPEGVWHCPDCKDVGPEENLARTNVIRLKRVVQNPEYDVGGCVVCRSRDFIAGT FDDRTVIFCDQCEREFHVGCLRERGLCDLKEIPEGKWFCCNECYRVYLALQKSISSGVQTVCASQLDIICRKHAERGLNIDRANVQWHILMGKERREEDL PFLSKATSIFRECFDPIKARKGRDLIPLMVYGRNISGQEFQGMYCVVLTVKNTVVSAGLLRIFGSEVAELPLVATSRKHQGKGYFQALFSCVERFLCSLK VESLVLPAAEEAESIWTKRFGFERMTAENWAAYSKEFQLTIFGGTSMLEKKVPQEIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	3.9	0.8579
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	5.7	0.8503
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	7.1	0.8404
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	7.3	0.8504
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	7.5	0.8436
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	7.5	0.8013
AT3G20720			unknown protein		Lus10011166 [exp]	10.1	0.8347
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	13.4	0.8110
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	13.4	0.8040
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	19.8	0.7814

Compare expression of checked genes

Lus10024419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.