Plant FIBer expression Database

Lus10024420 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53670 51 / 7e-08 unknown protein
AT2G37480 47 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025314
[exp]
301 / 1e-104 AT2G37480 62 / 9e-12 unknown protein
Lus10003982
[exp]
161 / 3e-49 AT2G37480 91 / 2e-22 unknown protein
Lus10023755
[exp]
156 / 3e-47 AT2G37480 90 / 4e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G082100
[exp]
115 / 2e-31 AT3G53670 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10024420 pacid=23175010 polypeptide=Lus10024420 locus=Lus10024420.g ID=Lus10024420.BGIv1.0 annot-version=v1.0
ATGGACATTGGCCACCGTGATGCTGGTGATGCTCCGGTGGATGCTGAAGAAGTAAACCTCGAGAATTTGAGGTCTGAAACTACTCTGGAAACAGATCGAT
CTGAAGGAATCGATCCATCCGGACCTCAACCTGTTGTCAGTAAGTGCTTGGAGGATTCCACTACGTCCTCTTCTCTTGAAAACAATGGCCAGGAGACGGC
ACTGCCGGCTTTGTCCTCGGATCAGCCTCTCCAACACACCAAGTCTATGCCAATCAAATCCGCCATGAAAGGCAGCCGAGAGAAAACGGGCAAGGAAGCA
AAGAAGCTGAGTGTGAGTTGGGCACCTGATGTGTACGATCCAGTCCCTAATTCTCTGTGTCATACAGTTAAGAGCAGCAGCAGCAGTAAGAAGAAATCCA
GGAAAGACAAAGACAGCAAGAAGAATGGGAAGAAGGGACAAAAGGGCAACAGCTACTCATCTCGAGGAAGCAGCAGTAGTAGCAAGGACAAGAAGCAGGT
TCGGAGAAAGCCCGCTGCAAAGTCTTATAAATCACTGGATATCGACGACGAGGTTGGATACGGCGGTGATGGTTCTAGTAGTGTTGGGTTCGAGGTTGCG
AGTCCGGACTACTGCGGGAGTAGCTTCCTTAAGCAGTCTGTAACGGAGTTCCATTACTCTGTTGCAGAGGCATTGTGA
AA sequence
>Lus10024420 pacid=23175010 polypeptide=Lus10024420 locus=Lus10024420.g ID=Lus10024420.BGIv1.0 annot-version=v1.0
MDIGHRDAGDAPVDAEEVNLENLRSETTLETDRSEGIDPSGPQPVVSKCLEDSTTSSSLENNGQETALPALSSDQPLQHTKSMPIKSAMKGSREKTGKEA
KKLSVSWAPDVYDPVPNSLCHTVKSSSSSKKKSRKDKDSKKNGKKGQKGNSYSSRGSSSSSKDKKQVRRKPAAKSYKSLDIDDEVGYGGDGSSSVGFEVA
SPDYCGSSFLKQSVTEFHYSVAEAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37480 unknown protein Lus10024420
[exp]
0 1
AT1G79660 unknown protein Lus10024088
[exp]
1.4 0.9023
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Lus10002362
[exp]
3.9 0.8986
AT4G10170 SNARE-like superfamily protein... Lus10002944
[exp]
4.7 0.9149
AT4G21215 unknown protein Lus10018373
[exp]
5.5 0.8730
AT3G27820 ATMDAR4 monodehydroascorbate reductase... Lus10013079
[exp]
6.6 0.8795
AT5G10860 CBSX3 CBS domain containing protein ... Lus10019117
[exp]
8.7 0.8986
AT4G13530 unknown protein Lus10003531
[exp]
9.5 0.8656
AT4G30780 unknown protein Lus10035819
[exp]
9.8 0.8578
AT1G14740 Protein of unknown function (D... Lus10013248
[exp]
11.1 0.8409
AT1G14290 SBH2 sphingoid base hydroxylase 2 (... Lus10030481
[exp]
12.0 0.8363

Lus10024420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.