Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53630 189 / 5e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003983 [exp] 224 / 1e-72 AT3G53630 207 / 1e-67 unknown protein Lus10023752 [exp] 221 / 2e-71 AT3G53630 207 / 1e-67 unknown protein Lus10025312 [exp] 92 / 2e-23 AT3G53630 66 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082400 [exp] 197 / 9e-63 AT3G53630 197 / 8e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024421 pacid=23174944 polypeptide=Lus10024421 locus=Lus10024421.g ID=Lus10024421.BGIv1.0 annot-version=v1.0 ATGAGCTCATTCAACACCACTGCAAACTTGGACAACCTCCTCCTCCAAACTCTGATGGGCCGTCTCCACATCCGTCCTCCTCCCGTCCCCTCCTCCCAAA CTAAATCCCTCGAGGACCTCCTCCTCGACGCCGTCAACGATCTCTCCGACGACGACTCTGACTACGACGACAACTACGGCGGAAGCAAATCGCAGCTCCG TAAGGAGGAAGCGAGGCTGGAGAAGGAGATCATCCGGGCGGTTCTGTCGGGGAATACCGAGTCGCTGAAGCCCAACTCGGGCCAGGCGGTTACAATTGCG GGAGAACATCATATATGCGTGGGGTGCCACGAGGAGAAAGGGTCGGATTATAGAGTGTGGGAGTGGCACGGCCACGTCATGTTGTTTGACGACGAGGATG GGTACGCTCCTGAGTATATCTACGGGAATTACTTTCAGAGGCTCATTGCTGGTGGCGGCGGTGGTCATGTTAATATTTCGGAGGAGGAAAGTGTAGACGA AGAAGAAGAAGAAGAAGAAGAGGAAGAGATAAGGGGGAATTTGGGGTTGAGGGAGTTGATTGATGGTGGGGATGATTCCAAAGATGCTCGGATACTGCAT AGGAATATAGGTAGTAGTGGTAAAGCAAAGATTTTTCCGTTCCCGACTTCCTCCGACGATCGAATAAAAAAAATAGCGCCGAAGGGGGAGAAGAAGCTCG CATCGACGGACAAGTCCCCAACTGCATCGGTCGAGAAGCAATCGAAGATCGAGAAGAAGGTGACCAAGGAAGGAGGCGCCGACAAGAAGAAGAAGAAGGT GAAGAAAAGCAGCAAGACGTATAAGATCTACATTTTCAAGGTTCTGAAGTAG
AA sequence Show only first row Show all	>Lus10024421 pacid=23174944 polypeptide=Lus10024421 locus=Lus10024421.g ID=Lus10024421.BGIv1.0 annot-version=v1.0 MSSFNTTANLDNLLLQTLMGRLHIRPPPVPSSQTKSLEDLLLDAVNDLSDDDSDYDDNYGGSKSQLRKEEARLEKEIIRAVLSGNTESLKPNSGQAVTIA GEHHICVGCHEEKGSDYRVWEWHGHVMLFDDEDGYAPEYIYGNYFQRLIAGGGGGHVNISEEESVDEEEEEEEEEEIRGNLGLRELIDGGDDSKDARILH RNIGSSGKAKIFPFPTSSDDRIKKIAPKGEKKLASTDKSPTASVEKQSKIEKKVTKEGGADKKKKKVKKSSKTYKIYIFKVLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53630			unknown protein		Lus10024421 [exp]	0	1
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	1.0	0.9299
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	2.4	0.9254
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	3.5	0.9206
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	4.9	0.9254
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	5.5	0.9273
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	7.4	0.9217
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	7.9	0.9201
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	8.0	0.9137
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	8.4	0.8983
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	8.8	0.9069

Compare expression of checked genes

Lus10024421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.