Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53620 385 / 3e-138 ATPPA4 pyrophosphorylase 4 (.1) AT1G01050 366 / 2e-130 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 356 / 1e-126 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 352 / 6e-125 ATPPA5 pyrophosphorylase 5 (.1) AT2G18230 327 / 3e-115 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 81 / 3e-18 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025311 [exp] 449 / 2e-161 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10025999 [exp] 352 / 5e-125 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10005139 [exp] 352 / 5e-125 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10014292 [exp] 352 / 6e-125 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10030179 [exp] 352 / 7e-125 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10041767 [exp] 352 / 7e-125 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10028320 [exp] 352 / 9e-125 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10037239 [exp] 82 / 2e-18 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 82 / 3e-18 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082500 [exp] 407 / 9e-147 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.002G181300 [exp] 364 / 1e-129 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 363 / 1e-129 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.007G022700 [exp] 353 / 2e-125 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.009G081200 [exp] 83 / 7e-19 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 80 / 9e-18 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10024422 pacid=23174972 polypeptide=Lus10024422 locus=Lus10024422.g ID=Lus10024422.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGATTGAGACTCAAATCAAGGCTCCTGTTGCTGCCGTGCCATACTCACATCCTCCTCTGAACGAGCGCATACTTTCATCCATGACTCGGA GGTCTGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGGACCTGGAGCTCCCAAGATATTCAACTGTGTGGTTGAGATAGGGAAAGGCAGCAAGGTGAA ATATGAACTTGACAAGAAGAGTGGACTTATCAAGGTTGATCGTGTGCTTTACTCTTCAGTTGTGTATCCCCACAACTATGGCTTTGTGCCACGTACTCTC TGCGAGGACAACGATCCCCTGGATGTTTTGGTTATTATGCAGGAACCTGTCCTTCCTGGATGTTTTCTCCGAGCTAAGGCCATTGGGGTCATGCCTATGA TCGATCAGGGCGAGAAAGATGATAAGATCATTGCTGTTTGCGCCGATGACCCTGAGTACCGCCACTACAATGACATCAAGGAACTTCCACCCCATCGCCT TGCTGAGATTCGCCGTTTCTTCGAAGACTATAAGAAGAATGAAAACAAGGAAGTTGCTGTTAATGACTTCCTGCCAGCTACTGATGCGTACCAGGCCGTC CAGCACTCAATGAACCTCTATGCTGACTACATCGTGGAAAGCCTCAGGCGGTAG
AA sequence Show only first row Show all	>Lus10024422 pacid=23174972 polypeptide=Lus10024422 locus=Lus10024422.g ID=Lus10024422.BGIv1.0 annot-version=v1.0 MAPPIETQIKAPVAAVPYSHPPLNERILSSMTRRSVAAHPWHDLEIGPGAPKIFNCVVEIGKGSKVKYELDKKSGLIKVDRVLYSSVVYPHNYGFVPRTL CEDNDPLDVLVIMQEPVLPGCFLRAKAIGVMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPATDAYQAV QHSMNLYADYIVESLRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	0	1
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	1.0	0.9622
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	2.4	0.9208
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	3.5	0.9025
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	4.2	0.9166
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	4.9	0.9091
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	5.0	0.9057
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	9.0	0.8392
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	9.8	0.8920
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	11.0	0.8932
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	11.3	0.8973

Compare expression of checked genes

Lus10024422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.