Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37460 452 / 8e-159 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 386 / 5e-133 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 349 / 7e-119 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 323 / 3e-108 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 319 / 1e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 316 / 5e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 314 / 2e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 313 / 2e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 299 / 6e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 286 / 1e-93 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025308 [exp] 667 / 0 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007696 [exp] 513 / 0 AT2G37460 464 / 1e-163 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024425 [exp] 446 / 3e-155 AT2G37460 417 / 1e-144 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 400 / 3e-138 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 399 / 3e-138 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 376 / 4e-129 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 372 / 3e-127 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 361 / 7e-123 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 359 / 4e-122 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082700 [exp] 480 / 2e-170 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 401 / 9e-139 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 379 / 3e-130 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 355 / 1e-120 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 350 / 1e-118 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 333 / 5e-112 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 330 / 3e-111 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 327 / 2e-109 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 315 / 3e-105 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 303 / 5e-100 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10024424 pacid=23174917 polypeptide=Lus10024424 locus=Lus10024424.g ID=Lus10024424.BGIv1.0 annot-version=v1.0 ATGCTCAAGTCATCAAAAGGTGCTCTCTGGGGAAGATGGAAGCCATTCATTGCTGTTACATTCCTACAAATCGGGCTGGCCGGAATGGACATTCTGTCCA AAGCCGCCCTCAACCAAGGAATGAGCAACTATGTCCTCGTTGTCTATCGACATGCCTTCGCCACCCTCGTCATTGCCCCTTTCGCCCTTCTTCTCGACAG GAAAGTGAGGCCCAAAATGACGTGGTCGATATTCATTAAAGTAATGGCGCTCGGCTTACTGGAGCCAGTGATAGACCAAAACTTGTACTTCCTAGGGATG AAGTACACAACAGCAACCTTCGCAGCAGCAATCATCAACATCCTTCCTGCCATCACTTTCGTCATGGCATGGATAGTCGGGATGGAGAAGGTTCGGATGA AGTCGGTCCATAGTCAAGTCAAAGTGATGGGAACAATAGCTACGGTGGGAGGAGCGATGGTGATGACGATGATCAAAGGTCCGGTGGTCGAGTTCTTTTG GACGAAAGGAAGGAGCTTTCATGGCTTAGGAGGAGCAGCTGGTGGAGTAGACCTCCATAGCTCAATCAAGGGTGCTCTCATGATCACTGTAGGAGCCTTC AGTTGGGCTGGTTTTGTCATTTTACAGGCGATCACACTGAATACGTATCCGGCTGAGCTTTCTTTGACGGCATTAATTTGCCTGATGGGTACAATAGAAG GAGCTGCAGTGGCACTAGTGATGGAGAGAGGCAACCCGCAAGTCTGGATTCTTCACTGGGACACTAAACTACTAGCAGCAGTATATAGCGGAGTGGTGTG TTCGGGATTTGCGTATTACATACAAGGAGTGGTGATGAAAGAGAGAGGTCCAGTTTTCGTGACAGCGTTCAGTCCGCTTTGCATGGTTGTGGTTGCTGTA ATGAGCTCCATCATTTTTGCTGAACAAATGTTCCTTGGAAGGGTAATTGGAGCTGGAATCATTGTAGCAGGGCTCTACCTTGTAGTTTGGGGTAAAAGCA AGGACTATTCTTCTGAACAACAACAACAAGTACTGATGATTCTTCCAAGCAGTTTGGCAGCAGGAAATGATATTGGATCGTGTTGTAATCAGCAAGATCA TAATCATAATCATCATCAGCTTCAGCAACATAGTTTGGTAGTTGAAGCTTCTTCTTTGGCTGTACAACAACCAATTAAGGATGATAGATCAACTACTGCC TGA
AA sequence Show only first row Show all	>Lus10024424 pacid=23174917 polypeptide=Lus10024424 locus=Lus10024424.g ID=Lus10024424.BGIv1.0 annot-version=v1.0 MLKSSKGALWGRWKPFIAVTFLQIGLAGMDILSKAALNQGMSNYVLVVYRHAFATLVIAPFALLLDRKVRPKMTWSIFIKVMALGLLEPVIDQNLYFLGM KYTTATFAAAIINILPAITFVMAWIVGMEKVRMKSVHSQVKVMGTIATVGGAMVMTMIKGPVVEFFWTKGRSFHGLGGAAGGVDLHSSIKGALMITVGAF SWAGFVILQAITLNTYPAELSLTALICLMGTIEGAAVALVMERGNPQVWILHWDTKLLAAVYSGVVCSGFAYYIQGVVMKERGPVFVTAFSPLCMVVVAV MSSIIFAEQMFLGRVIGAGIIVAGLYLVVWGKSKDYSSEQQQQVLMILPSSLAAGNDIGSCCNQQDHNHNHHQLQQHSLVVEASSLAVQQPIKDDRSTTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024424 [exp]	0	1
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	4.2	0.8275
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	7.2	0.8551
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	13.4	0.8024
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	15.6	0.8411
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	16.1	0.8524
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	16.4	0.8277
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	25.7	0.7525
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	28.2	0.8103
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	29.1	0.8246
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	30.1	0.8233

Compare expression of checked genes

Lus10024424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.