Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37460 339 / 7e-114 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 317 / 6e-106 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 274 / 2e-88 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 238 / 3e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 228 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 228 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 220 / 1e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 214 / 2e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 213 / 4e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 192 / 1e-56 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025308 [exp] 617 / 0 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 413 / 2e-142 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007696 [exp] 370 / 9e-126 AT2G37460 464 / 1e-163 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 283 / 3e-92 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 283 / 1e-91 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 271 / 2e-87 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 271 / 4e-87 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 266 / 3e-85 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 265 / 6e-85 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082700 [exp] 353 / 8e-120 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 280 / 7e-91 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 267 / 8e-86 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 253 / 4e-80 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 245 / 3e-77 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 235 / 5e-73 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 231 / 1e-71 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 231 / 2e-71 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 231 / 3e-71 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 228 / 6e-71 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10024425 pacid=23174977 polypeptide=Lus10024425 locus=Lus10024425.g ID=Lus10024425.BGIv1.0 annot-version=v1.0 ATGGGCAGATCAATTAGCAATGTCCTCTTTAATCATTTTCAATATGATAGGCATGAACTTTGCATTCTTCATGAACTTTCTCCTCTGGAAAAACCAGAAA CACAAAGAACGTTTGCACAACAAATACACACAGACACACACTCAGCTCCTACTTCCAGGAATCATCAACCAAATAGTGGAATGCTATGGAGAGGATGGAA GCCCCTCATTCTGATAACAATGCTGCAAGTTGGGCTAGCTGGAATGGACATTCTGTCAAAGGCTGCCCTCAATCAAGGCATGAGCAACTACGTTCTCGTT GTCTATTGCCATGCCTTCGCCACCCTCGTCTTTTCCCCTTTCGCCCTCTTTTTCGACCGGCCAGTAATAGACCAAAACCTGTACTTCCTGGGAATGAAGT ACACCACGGCAACATTTGCAGCTGCCATAGTCAACATGCTTCCTGCAATAACATTTCTCATGGCGTGCCTTGTCGGGCTTGAGAAAATTCGAGCCAAGTC GGTCCACAGCCAGGCGAAAGTGGTTGGAACAGTGGCAACGGTTGCAGGAGCCATGGTTATGATAATCATCAAAGGTCCGGTGGTGGAGTTGTTCTGGAGT AAAGGAAGGAGGTTCTACGGCCAGGGAGGAGGAAGCAGTAGCGGCGGGGAGATTGACCTCCATAGCTCCGTTAAAGGTTCCCTAATGATAATGGCTGGCT CCTTCAGCTGCGCTGCTTTCGTGATTTTGCAGGCAATCACGATGAAGACTTATCCAGCAGAGCTGTCGCTGACAGCTCTGATATGCCTTATGGGTGCAAT AGAAGGGAGCATCGTGGCGGTTGTGATGGAGAGAGGGAATCCCCAAGTGTGGGCTCTTCACTGGGACACCAAATTACTTGCTACAGCTTACAATGGAGTG GTTTGTGCAGGACTGACATACTACATACAAGGGGTGGTGATGAAAGAGAGAGGCCCGGTTTTCGCCACAGCTTTTAGCCCCCTGTGCATGATTGTGGTGG CAATCGTGAGCTCCGTCATTTTTGCAGAACAGATGTTCCTCGGAAGGGTGGTTGGAGCTGCAGTCATTGTAGCAGGGTTGTACCTTGTCATTTGGGGCAA AACGAAGGACCATGATGATAATTCTCCAATGGCAAAAGCTAATGCTGACGAACAAGGGATTTCAACAATCCAGATGCGGGATGCATCTCGTGGCGATGGA GGACAAAATCGCAGTCATAATCAGCATCTTGGTGTGACAATTGAAGCAGCTGCTTCTTCTTCTTCTTCATCTAAGGCAACACCCGCCCGGGATGAAACAT CAACTGAGCATGCTAGTCATAATCTACATGCTGTATAA
AA sequence Show only first row Show all	>Lus10024425 pacid=23174977 polypeptide=Lus10024425 locus=Lus10024425.g ID=Lus10024425.BGIv1.0 annot-version=v1.0 MGRSISNVLFNHFQYDRHELCILHELSPLEKPETQRTFAQQIHTDTHSAPTSRNHQPNSGMLWRGWKPLILITMLQVGLAGMDILSKAALNQGMSNYVLV VYCHAFATLVFSPFALFFDRPVIDQNLYFLGMKYTTATFAAAIVNMLPAITFLMACLVGLEKIRAKSVHSQAKVVGTVATVAGAMVMIIIKGPVVELFWS KGRRFYGQGGGSSSGGEIDLHSSVKGSLMIMAGSFSCAAFVILQAITMKTYPAELSLTALICLMGAIEGSIVAVVMERGNPQVWALHWDTKLLATAYNGV VCAGLTYYIQGVVMKERGPVFATAFSPLCMIVVAIVSSVIFAEQMFLGRVVGAAVIVAGLYLVIWGKTKDHDDNSPMAKANADEQGISTIQMRDASRGDG GQNRSHNQHLGVTIEAAASSSSSSKATPARDETSTEHASHNLHAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024425 [exp]	0	1
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	3.3	0.8914
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	9.6	0.8570
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	9.9	0.8032
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	14.3	0.8469
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	16.9	0.8200
AT3G19550			unknown protein		Lus10013900 [exp]	18.5	0.8304
					Lus10026075 [exp]	19.1	0.7931
AT5G01660			unknown protein		Lus10002863 [exp]	23.7	0.7649
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	27.4	0.8215
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	27.7	0.8241

Compare expression of checked genes

Lus10024425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.