Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59830 201 / 3e-59 unknown protein AT5G13660 195 / 6e-56 unknown protein AT3G53680 155 / 3e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 142 / 4e-36 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 82 / 2e-16 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 80 / 1e-15 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024427 [exp] 889 / 0 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10025307 [exp] 839 / 0 AT5G59830 238 / 6e-73 unknown protein Lus10005963 [exp] 218 / 1e-61 AT5G13660 216 / 4e-60 unknown protein Lus10040857 [exp] 179 / 8e-51 AT5G59830 262 / 2e-83 unknown protein Lus10005889 [exp] 178 / 3e-50 AT5G59830 278 / 2e-89 unknown protein Lus10025315 [exp] 150 / 1e-38 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 149 / 3e-38 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 75 / 9e-14 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 74 / 1e-13 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082800 [exp] 520 / 0 AT5G13660 261 / 2e-80 unknown protein Potri.009G027800 [exp] 295 / 4e-95 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 291 / 8e-94 AT5G59830 375 / 2e-127 unknown protein Potri.010G209300 [exp] 204 / 1e-58 AT5G13660 308 / 2e-97 unknown protein Potri.008G051300 [exp] 201 / 1e-57 AT5G13660 317 / 1e-100 unknown protein Potri.006G083600 [exp] 162 / 1e-42 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 77 / 9e-15 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 76 / 3e-14 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 74 / 2e-13 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 71 / 9e-13 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024426 pacid=23175049 polypeptide=Lus10024426 locus=Lus10024426.g ID=Lus10024426.BGIv1.0 annot-version=v1.0 ATGGATGGCTCTGAAGCAGAGCTGTTTCCTAACAAGAAACAGGCAGTAGGAATTCCAACCAGCAATCTGTTTACTGATCTCCTGACTTCAAATGTTCCTC CCAGCTGGGGTAATCCTTCTAGTTTCCAGTCAATCTCTGGCCATTTTACCGACCGGTTATTTGATTCTGAGCCTCCCAGGCCGGTCAATTTTGATGACAG AAGCATAGCCTCTGTTAGCTCTCAAAATTTTGCCATGGGTAGGAAGGTCGAGGTCGATCCCTTCGGAAGTGGTTCATCTTTTGGTTTGTCTATGTCTCAC ACACTGGAAGATCCCGATCCTCGTTCTGGGTTAAACTATAGCGGGATTAGAAAAGTGAAAGTTAGTCAGGTTAGAGAGGCTGACAGTGGTATGCCCGTAT CTCGTGAAAATATTTATAATAGGGTTGACTGCAATAATGTAGCAGCTACTGATTCATATGAGACAAGAGATGAAGCTTCCATATCAATGGGTCTTACTTA CACAAAACGAGATGGAAGCATGATGTCTGTAGGTGAATCCTATGGCCAGGATCATAGTAGCTTCATTTCGATGGGGCTCGCATACAGTAAAACAGAGGAT AACATGTCAGAGAACCAATCCTATAAGGAGAGCAATGATTCTCTTGGTATGGGGCATTCATTTAGCAAGTTGGACAACAATCTAGTACCTATGACACAAA CCTACAATAAGGTAGAAGAGAATAGGATTCCGATCGGGAACATGTACCCTGGAGGAAGTGAGAGCACCATCTCGATGGGTCAAACCTACAACAATGGTGA AATGGCCAATTTGTCAATGGGACATGGGTATAACAAGGGAGAGAGCACCATAATATCTTTTGGTGGTTATGATGAGGATGAGTTGAATTCTTCAGGAAGG CTATTATCCACTTTCGGACTCTTGGGTCAAACTTCAATCCAAGGTCTTGGTTCAACAAATGACGGGAACTCAAATATCGGTACCCTTGTAGCCTCAGCTC GAGCAGCTGCTTCGGGAACTGGAAGTGAGTCTAGGAAAAAAGATGACACAAAAGCACCAAAAAAAGCTCCTCCAAACAACTTCCCTTCAAATGTCAGAAG TCTGCTTTCTACTGGAATACTTGATGGAGTTCAAGTGAAGTATATTGCTTGGTCAAGAGAGAAGGAGCTCCGTGGAGTGATAAGAGGTTCTGGATACCTA TGTAGTTGTCAGGCATGCAATTTTTCCAAGGTGATCAATGCATTTGAATTTGAGAGGCATGCTAATTGCAAAACAAAGCACCCAAACAATCACATATATT TCGACAATGGAAAGACGATCTATGGGATCGTCCAGGAGCTAAGAAGCACTCCACAGCACATGCTGTTTGATGTTATGCAGACAATAACCGGTTCCCCTAT CAATCAGAAGTCCTTTCATCTGTGGAAAGGTAATGTTCCTGTTTTTTACCCTACTAACATGCATTGA
AA sequence Show only first row Show all	>Lus10024426 pacid=23175049 polypeptide=Lus10024426 locus=Lus10024426.g ID=Lus10024426.BGIv1.0 annot-version=v1.0 MDGSEAELFPNKKQAVGIPTSNLFTDLLTSNVPPSWGNPSSFQSISGHFTDRLFDSEPPRPVNFDDRSIASVSSQNFAMGRKVEVDPFGSGSSFGLSMSH TLEDPDPRSGLNYSGIRKVKVSQVREADSGMPVSRENIYNRVDCNNVAATDSYETRDEASISMGLTYTKRDGSMMSVGESYGQDHSSFISMGLAYSKTED NMSENQSYKESNDSLGMGHSFSKLDNNLVPMTQTYNKVEENRIPIGNMYPGGSESTISMGQTYNNGEMANLSMGHGYNKGESTIISFGGYDEDELNSSGR LLSTFGLLGQTSIQGLGSTNDGNSNIGTLVASARAAASGTGSESRKKDDTKAPKKAPPNNFPSNVRSLLSTGILDGVQVKYIAWSREKELRGVIRGSGYL CSCQACNFSKVINAFEFERHANCKTKHPNNHIYFDNGKTIYGIVQELRSTPQHMLFDVMQTITGSPINQKSFHLWKGNVPVFYPTNMH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59830			unknown protein		Lus10024426 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	2.4	0.7965
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	6.1	0.8259
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	10.2	0.7510
AT5G13560			unknown protein		Lus10023462 [exp]	10.5	0.7896
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	12.1	0.8239
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	22.6	0.7866
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	24.3	0.7334
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	27.2	0.7601
AT2G28130			unknown protein		Lus10021421 [exp]	29.5	0.7470
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	30.3	0.7615

Compare expression of checked genes

Lus10024426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.