Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37440 484 / 5e-160 DNAse I-like superfamily protein (.1.2) AT3G63240 408 / 3e-130 DNAse I-like superfamily protein (.1) AT5G65090 392 / 3e-125 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 325 / 2e-98 CVL1 CVP2 like 1 (.1.2) AT1G05470 321 / 7e-97 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 308 / 2e-94 DNAse I-like superfamily protein (.1.2) AT2G01900 265 / 1e-78 DNAse I-like superfamily protein (.1) AT1G34120 255 / 2e-73 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 257 / 3e-73 DNAse I-like superfamily protein (.1.2) AT4G18010 255 / 5e-73 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025305 [exp] 898 / 0 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10024426 [exp] 889 / 0 AT5G59830 231 / 1e-70 unknown protein Lus10025307 [exp] 861 / 0 AT5G59830 238 / 6e-73 unknown protein Lus10034857 [exp] 383 / 2e-121 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 380 / 1e-119 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 375 / 8e-119 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 334 / 1e-104 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10042619 [exp] 343 / 3e-104 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 332 / 8e-101 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082800 [exp] 537 / 1e-179 AT5G13660 261 / 2e-80 unknown protein Potri.005G078000 [exp] 404 / 3e-128 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 397 / 1e-126 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 395 / 3e-126 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 385 / 2e-121 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.012G041600 [exp] 334 / 2e-103 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 330 / 1e-100 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 322 / 2e-97 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 317 / 3e-97 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 320 / 5e-97 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10024427 pacid=23174945 polypeptide=Lus10024427 locus=Lus10024427.g ID=Lus10024427.BGIv1.0 annot-version=v1.0 ATGGGTGGTTTGCTTCTCTGTCCTTTCTTGCCAGGTTTCCCCGCCGGAATTACTCTGCCCGTTTCCTCCTATTTGATCCGCCGGGTTTTCAGACTGTCAC AAATTCCGACTATGCCTGCAGAGACCATGAGTAACAATCCCAAGGTTCGTCGTGATCCGATATCTTCTGCTTGGCCAGTAGTTAGGAGATGGCTCAACTT ACAGAGCAAATCCGACGAGTTTAATTTCGATTATCCTTTGCCCGAAGGTAAAGATTATTTTCTCATCTCCGGTCATTTGTGCCTCATTTTTTTCCGAGTA CTAAAACACTCTGTTCCCGGCGAAATCGCAGACGGGAAAACGCAGGGGAGTAATAGTAGCTCAGGCGACGATGATTCAGACTTCATCTTTTCTGGATTGC TAACGGAAGAACTCGACGATCTGAAACCGGCCAAAACAGAGACCGATACACCGCCGGTCGCCGATTCGTTAGATCTCAAGATGTTTGTAGGCACATGGAA CGTCGGAGGCAAGTCTCCTCACGATGGCTTGAACTTGAAAGATTGGCTGCGTTCGTCGTCACCGTCCGATATTTACGTCCTAGGGTTCCAGGAAATTGTT CCGTTGAACGCTGGCAACGTCCTGGGCCCGGAGGACACCACTCCGGCGACGAAGTGGCTGTCGCTAATCTGGCAGGCGCTGAACGGGACCAAGTCGGACG AAGAGCTCTGCCAGTACTACACAGCTGCCGCCGAGCAGAAATGGGCTGCATCACCGCGGCCGGTTGATCAATCAGCTAAGCCTCCTCGGCTCAGCTTCTT GAACCTGATATCCATAGAAGACGAACTCGGGAGAGAGGATTTCCAGAGGTTCGTCAGCTTGAATTCTAACGTCGCCGGATCTACCGAAGTCCTTCCTAGC CCACGGCCGTCGAATTCCGGCGATCCGGCAAGGAGGCCGAAGTACTGCCTTGTGACTAGCAAGCAGATGGTTGGGATATTTCTCTGCGTTTGGGTTCGAG CCGATCTGGTTGAAAACCTCAGCAATCTCAAGGTTTCGTGCGTTGGCCGCGGAATCATGGGCCGATTAGGAAACAAGGGATCAGTATCGATAAGTATGAG TCTATACAATACAACGTTCTGTTTTGTGGGTACGCATTTAACTTCAGGGGAGAAAGAAGGAGACGAAACCAGAAGAAATTCCGATGTCTCTGAGATTTTG AAGAAAACCAGATTCAATAATCACCCGGAAATGATACTAGATCACGACAATGTAATTTGGCTGGGCGATTTGAACTACCGGCTAGCAACCACACACGTGG AAACGTGCGAGTTGCTGGAGAAGAACGATTGGGAAGCTTTGCTTGAGAAAGATCAACTGAAAATACAGCGGAAGGCTGGGAGGATTTTCGAAGGATGGGA GGAAGGTCAGATCTACTTTGCACCGACTTATAAGTATTTAGCTGATTCGGATAATTACGCGGTCCAGGCTTGTAAGTCGAAAGAGAAGCGTCGGATTCCG GCGTGGTGCGATCGGATACTGTGGAAAGGCGACGGACTGAAGCAGATTTGGTATGTCAGAGGGGAATCCAAGTTCTCCGATCACCGGCCAGTTTACTCGT TGTTCTCGGTCAATGTGAAAGCCGACGAGGGAAGGAAATTGGTGAAGTCGGAGTCCGTGGTGCGTAAATCTTCGAGGTTTTTCCCGGTGAGATCTTCGCC GACGACATCCATTCTGTTGCAGTCTCCCGGCGCGGCGAAAGTTAGGGCGGAGGAGCTGTTGGGAATCCCGGCGACAGCGAGCACCCCGATGTTGACGTGT CTTCCGGATCAAGGATTTTGGACGGCCAAAGGTTCCGGTTCCGTAAACAATGACGATGCTAACGAAGATTCATCTAAAAGCAATTCTAAGCGTTCTAATC CGTGGTTTATGGATGGCTCTGAAGCAGAGCTGTTTCCTAACAAGAAACAGGCAGTAGGAATTCCAACCAGCAATCTATTTACTGATCTCCTGACTTCACA TGTTCCTCCCAGCTGGGGTAATCCTTCTAGTTTCCAGTCAATCTCTGGCCATTTTACCGACCGGTTATTTGATTCTGAGCCTCCCAGGCCGGTCAATTTT GATGACAGAAGCATAGCCTCTGTTAGCTCTCAAAATTTTGCCATCGGTAGGAAGGTCGAGGTCGATCCCTTCGGAAGTGGTTCATCTTTTGGTTTGTCTA TGTCTCACACACTGGAAGATCCCGATCCTCGTTCTGGGTTAAACTATAGCGGGATTAGAAAAGTGAAAGTTAGTCAGGTTAGAGAGGCTGACTGTGCTAT GCCCGTATCTGTTGAAAATATTTATAATAGGGTTGACTGCAATAATGTAGCAGCTACTGATTCATATGAGACAAGAGATGAAGCTTCCATATCCATGGGT CTTGCTTACACAAAAGGAGATGGAAGCATGATGTCTGTAGGTGAGTCCTATGGCCAGGATCATAGTAGCTTCATTTCAATGGGGCTCGCATACAGTAAAA CGGAGGATAACTTGTCAGAGAATCAATCCTATAGGGAGAGCAATGATTCTCTTGCTATGGGGGATTCATTTAGCAAGTTGGACAACAATCTGGTACCTAT GACACAAACCTACAATAAGGTAGAAGAGAATAGGATTCCGATCGGGAACATGTACCCTGGAGGAAGTGAGAGCACTATCTCGATGGGTCAAACCTACAAC AATGGTGAAATGGCCAATTTGTCAATGGGACATGGGTATAACAAGGGAGAGAGCACCATAATATCTTTTGGTGGTTATGATGAGGATGAGTTGAATTCTT CAGGAAGGCTATTATCCACTTTTGGACTCTTGGGTCAAACTTCAATCCAAGGTCTTGGTTCAACAAATGACGGGAACTCAAATATTGGTACCCTTGTAGC CTCAGCTCGAGCAGCTGCTTCGGGAACTGGAAGTGAGTCTAGGAAAAAAGATGACACAAAAGCACCAAAAAAAGCTCCTCCAAACAACTTCCCTTCAAAT GTCAGAAGTCTGCTTTCTACTGGAATACTTGATGGAGTTCAAGTGAAGTATATTGCTTGGTCAAGAGAGAAGGAGCTCCGTGGAGTGATAAGAGGTTCTG GATACCTATGTAGTTGTCAGGCATGCAATTTTTCCAAGGTGATCAATGCATTTGAATTTGAGAGGCATGCTAATTGCAAAACAAAGCACCCAAACAATCA CATATATTTCGACAATGGAAAGACGATCTATGGGATCGTCCAGGAGCTAAGAAGCACTCCACAGCACATGCTGTTTGATGTTATGCAGACAATAACCGGT TTTTTTTTTTTTTTTTTTAGGCACACAATAACCGGTTCCCCTATCAATCAGAAGTCCTTTCATCTGTGGAAAGGTAATGTTCCTGTTATTTACCCTACTA ACTACGTTTAG
AA sequence Show only first row Show all	>Lus10024427 pacid=23174945 polypeptide=Lus10024427 locus=Lus10024427.g ID=Lus10024427.BGIv1.0 annot-version=v1.0 MGGLLLCPFLPGFPAGITLPVSSYLIRRVFRLSQIPTMPAETMSNNPKVRRDPISSAWPVVRRWLNLQSKSDEFNFDYPLPEGKDYFLISGHLCLIFFRV LKHSVPGEIADGKTQGSNSSSGDDDSDFIFSGLLTEELDDLKPAKTETDTPPVADSLDLKMFVGTWNVGGKSPHDGLNLKDWLRSSSPSDIYVLGFQEIV PLNAGNVLGPEDTTPATKWLSLIWQALNGTKSDEELCQYYTAAAEQKWAASPRPVDQSAKPPRLSFLNLISIEDELGREDFQRFVSLNSNVAGSTEVLPS PRPSNSGDPARRPKYCLVTSKQMVGIFLCVWVRADLVENLSNLKVSCVGRGIMGRLGNKGSVSISMSLYNTTFCFVGTHLTSGEKEGDETRRNSDVSEIL KKTRFNNHPEMILDHDNVIWLGDLNYRLATTHVETCELLEKNDWEALLEKDQLKIQRKAGRIFEGWEEGQIYFAPTYKYLADSDNYAVQACKSKEKRRIP AWCDRILWKGDGLKQIWYVRGESKFSDHRPVYSLFSVNVKADEGRKLVKSESVVRKSSRFFPVRSSPTTSILLQSPGAAKVRAEELLGIPATASTPMLTC LPDQGFWTAKGSGSVNNDDANEDSSKSNSKRSNPWFMDGSEAELFPNKKQAVGIPTSNLFTDLLTSHVPPSWGNPSSFQSISGHFTDRLFDSEPPRPVNF DDRSIASVSSQNFAIGRKVEVDPFGSGSSFGLSMSHTLEDPDPRSGLNYSGIRKVKVSQVREADCAMPVSVENIYNRVDCNNVAATDSYETRDEASISMG LAYTKGDGSMMSVGESYGQDHSSFISMGLAYSKTEDNLSENQSYRESNDSLAMGDSFSKLDNNLVPMTQTYNKVEENRIPIGNMYPGGSESTISMGQTYN NGEMANLSMGHGYNKGESTIISFGGYDEDELNSSGRLLSTFGLLGQTSIQGLGSTNDGNSNIGTLVASARAAASGTGSESRKKDDTKAPKKAPPNNFPSN VRSLLSTGILDGVQVKYIAWSREKELRGVIRGSGYLCSCQACNFSKVINAFEFERHANCKTKHPNNHIYFDNGKTIYGIVQELRSTPQHMLFDVMQTITG FFFFFFRHTITGSPINQKSFHLWKGNVPVIYPTNYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	4.2	0.7697
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	4.9	0.7626
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	9.4	0.7590
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	11.6	0.7087
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	22.0	0.7662
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	28.9	0.7521
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	29.4	0.7350
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	30.7	0.7266
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10042991 [exp]	30.8	0.7374
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	36.3	0.7590

Compare expression of checked genes

Lus10024427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.