Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37430 146 / 7e-45 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 133 / 2e-39 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28710 110 / 4e-31 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 101 / 3e-26 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 99 / 4e-26 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G46080 94 / 3e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 96 / 2e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 92 / 1e-22 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 89 / 2e-22 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G46070 88 / 4e-22 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030330 [exp] 128 / 4e-37 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023433 [exp] 126 / 9e-37 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10040312 [exp] 118 / 2e-33 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021409 [exp] 105 / 5e-28 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 94 / 2e-23 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 92 / 6e-23 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 89 / 3e-21 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 83 / 6e-20 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 78 / 5e-18 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051200 [exp] 140 / 2e-42 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 138 / 2e-41 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 122 / 6e-35 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 117 / 5e-33 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G216900 [exp] 91 / 3e-22 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 91 / 5e-22 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 89 / 7e-22 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 90 / 1e-21 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 87 / 9e-21 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 83 / 4e-19 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024428 pacid=23174982 polypeptide=Lus10024428 locus=Lus10024428.g ID=Lus10024428.BGIv1.0 annot-version=v1.0 ATGGCCATGAAAAGAAGCAGAGCAGACGGATCAGAATTCGAGTCCTTGGACTTGGCGAAATGTCTAATCTACCTCTCCCACGGCTTCAATGCCGCCGCCA ATTCCAAGCCTCGTCAAGGCGGCGACTCTGCCGCCGCCGACGTTTTCGAATGCAAGACTTGCAGCCGGAAGTTCTCGTCCTTCCAAGCTCTGGGCGGTCA CCGAGCCAGCCACAAGAGGCCCAAGACTTCACTGGGCTCTGATAAGCTGGGCCACGACGATGGCAAGCTATTGGGCTTGATGACCAAGCCCAAGATGCAC GAGTGCACGATCTGTGGAGTCGAGTTCGCTCTGGGCCAGGCTCTAGGCGGACACATGCGGAGGCACCGTGCCGCATCGATGGCGACGGCGACACCAACGT TGGCGGCGGCGGGAAGAGGCCCGGTTGCGGCGGCGGTGGGAGGGAGCAAGGTGCCGGTGCTGATGAGGACGAGCAGCAGCAAGCGAGTGTTTGGGCTGGA TTTGAACTTGACGCCGTTGGAGAATGATTTGGAGTATTTGTTTGGGAAAATGGCTCCAAAAGTTTCAGTTTGA
AA sequence Show only first row Show all	>Lus10024428 pacid=23174982 polypeptide=Lus10024428 locus=Lus10024428.g ID=Lus10024428.BGIv1.0 annot-version=v1.0 MAMKRSRADGSEFESLDLAKCLIYLSHGFNAAANSKPRQGGDSAAADVFECKTCSRKFSSFQALGGHRASHKRPKTSLGSDKLGHDDGKLLGLMTKPKMH ECTICGVEFALGQALGGHMRRHRAASMATATPTLAAAGRGPVAAAVGGSKVPVLMRTSSSKRVFGLDLNLTPLENDLEYLFGKMAPKVSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10024428 [exp]	0	1
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10015221 [exp]	1.0	0.9846
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10015296 [exp]	6.3	0.9750
					Lus10005525 [exp]	8.1	0.9721
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	9.0	0.9743
					Lus10000859 [exp]	12.6	0.9740
AT2G47485			unknown protein		Lus10033571 [exp]	14.1	0.9638
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	17.7	0.9718
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	17.9	0.9709
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	19.0	0.9557
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	20.3	0.9645

Compare expression of checked genes

Lus10024428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.