Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37420 1228 / 0 ATP binding microtubule motor family protein (.1) AT3G45850 893 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 848 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 701 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G53580 501 / 2e-165 diaminopimelate epimerase family protein (.1) AT2G22610 236 / 2e-63 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G59540 233 / 3e-63 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47820 233 / 2e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12020 229 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 230 / 6e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025304 [exp] 1850 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 898 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 877 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 709 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 704 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 689 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 669 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025303 [exp] 655 / 0 AT3G53580 545 / 0.0 diaminopimelate epimerase family protein (.1) Lus10017016 [exp] 642 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082900 [exp] 1386 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 905 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 894 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 744 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 692 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 691 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G120900 [exp] 497 / 5e-164 AT3G53580 491 / 6e-175 diaminopimelate epimerase family protein (.1) Potri.006G102700 [exp] 494 / 6e-163 AT3G53580 488 / 5e-174 diaminopimelate epimerase family protein (.1) Potri.007G046700 [exp] 237 / 7e-64 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 238 / 2e-63 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0288 [flax] [poplar] DAP_epimerase PF01678 [flax] [poplar] DAP_epimerase Diaminopimelate epimerase
Representative CDS sequence Show only first row Show all	>Lus10024429 pacid=23175034 polypeptide=Lus10024429 locus=Lus10024429.g ID=Lus10024429.BGIv1.0 annot-version=v1.0 ATGTCTGCAACCGCCGCCATTTCCCTCTCTATCTCGCCGTTGACCCGCCAATCTGTCGCTGTCGCCGCTTTTAATCCTCTTCGGTCTTCTTCTTCTTCTT CCTTCTCAACAGTTTCGGTTTGTCTCCCGGCAGCTCTTCGGCTCAGCTCCCTCAGCCCAAGTGTTTCGCTTAGAAACCCTAGCTTCCGCGTCTTAGCTAC CTCCATGAGCACACACGCCCCGGAGCAAACATCGCCCACCGCATTCCTCGATCGCAGAGAGAGCGGTGTCCTCCACTTCGTCAAGTATCACGGCCTCGGA AATGACTTCATCTTGGTGGACAACAGGGACTCTACTGAACCTAAAGTTACTCCGGAGCAAGCAAAGAAGCTATGCGACAGGAACTTCGGCATTGGGGCTG ACGGAGTGATTTTCGCCATGCCAGGGACTAATGGCACTGATTACACCATGAGGATCTTCAACTCTGATGGTAGTGAACCTGAAATGTGTGGTAATGGTGT GCGTTGCTTCGCCAGGTTTATTGCAGAGCTGGAGAATTTGCAAGGGAATCACAGTTTTAAAGTACACACCGGTGCTGGCTTAATTGTTCCTGAAATCCAA GACGATGGGAAGGTCAGGGTTGACATGGGTGAGCCAATACTGAAAGCAGCTGATGTACCAACCGGGCTTCCAGCAAATAAGCAAGAAGCTGCCGTTGAAT CTGAATTAGATATCGATGGAGTAACCTGGAATGTGACTTGTGTTAGCATGGGGAATCCTCATTGTGTGACTTTTGGTACCAAAGAAAACAAGGATCTGCA GGTTGATGAACTAAATTTGGCTGAAATTGGCCCGAAATTTGAGAAACACGTTATGTTTCCTGCACGTACAAATACTGAGTTTGTCCAAGTTTACTCGCCA TCACATCTGAAAATGCGAGTATGGGAACGTGGAGCAGGGGCAACTCTAGCGTGTGGAACTGGAGCTTGTGCAACGGTGGTGGCTGCTGTTCTTGAAGGTC GTGCTGGAAGGAGATGCACGGTGGATTTGCCTGGTGGGCCGCTAGAGATAGAGTGGAGCGCTGAAGACAACCGTATCTACATGACTGGCCCTGCCGAAGT GCTGATTCAGAATCAAAGGCCTTTTGGAAAGGCAAAACCAGCTCAAGCAGTAAACGAAGTTTTAAGTCCTCCAGCCTCTTCGCTTGGAACTCGGAAGGCA GGGTTAGGAGTAGTACCGTCTCCGTGTCCGTTCCTTACTCCCCGGCCGGAGAGGCGCCGGCCGGATTCCCGAGGTTCCGACTGGAGCTCCATCCGTCAGG ACCGAGATAAAGAAGTTAACGTCCAAGTCTTGCTCAGATGCAGGCCGTTGAGTGATGAAGAGCAAAGAGCAAACGTCGCAAAAGCGATCTCTTGCAATGA ACAGAGGAAAGAAGTAACTGTTCTGCAAAGTGTAGCTAACAAGCAAGTAGATAGAGCTTTCACGTTTGACAAGGTTTTTGGGCCTAAAGCACAGCAGAGA GCAATTTATGACCAAGCCATCTCCCCGATAGTCAAAGAAGTTCTTGACGGTTTCAACTGCACTGTGTTTGCTTATGGGCAGACAGGCACTGGAAAAACAT ATACAATGGAAGGTGGAATGAGAAATAAGGGTGGAGATTTGCCTGCTGAGGCTGGTGTTATCCCTAGAGCCGTTCGCCAAATCTTCGATACCTTAGAGGC CCAAAAGGCTGATTATAGCATGAAAGTGACGTTCCTGGAGCTGTACAATGAAGAAATAGCCGATTTGCTGGCGACAGAGGACAATGCGAGATTTGTAGAT GATAGGCAGAAGAAACCAATTTCTTTGATGGAGGATGGAAGGGGTTGTGTGGTTGTAAGAGGACTTGAAGAAGAAGTAGTGTATAGTGCAAATGATATCT ACACGCTCTTGGAACGAGGAGCAGCTAAAAGGCGTACAGCTGACACTTTATTGAACAAGCGCAGCAGTCGCTCTCACTCTATTTTTTCCATCACTGTCCA TATCAAAGAAGCGAATATTGGGGATGAAGAACTTATCAAATGTGGCAAGCTTAATCTTGTTGATTTGGCTGGTTCAGAAAATATCTCCCGCTCTGGTGCA AGAGAGGGTCGTGCAAGAGAAGCGGGAGAAATAAACAAGAGTTTACTTACCCTGGGCCGCGTTATAAATGCATTGGCAGAACATACAGCTCATATACCTT ATAGGGATAGCAAGTTGACGAGGCTACTAAGGGACTCCTTGGGTGGAAAGACGAAAACTTGCATCATTGCAACAATTTCTCCATCTGGTCATTCTCTGGA AGAAACCCTGAGCACTCTTGATTATGCCCATCGTGCTAAAAACATTAGAAACAAGCCCGAGGCAAACCAGAAAATTTCTAAGGCTGTTTTGCTCAAAGAT CTATTGTTAGAGATTGATCGAATGAAAGAAGATGTTCGAGCAGCCAGGGAAAGAAATGGTGTGTACGTTCCACATGATAGATTTTCCATGGAAGAAGCTG AAAAGAAGGCAAGGATTCAGAAGATAGAACAATTGGAGGTTGATTTGAATCTCAGCGAGAAGGAAGTTGCAAGATTCCGGGAGCTCTATCTGTCTGAGCA AGAAGATAAACTGGAAATGCAAAGTGAGATCAAGGAGTGCAAGGTGAATCTTGAAAAAACTAACAAAGAACTCTTGGATCTTCGAGAGAATCACAGAGTC GCAATCTCAACTTTGAACGAAAAAGAATCCATCATTTCTAAACTTCTGTATTCAGAAAATTCCTTAATTGAACGGGCGAAAGAGTTGTCCCATGATTTGC ATTCTGCTTCGGAAGATATTACTTCACTCTTCACAACATTAGATCAGAAAGATGAGATGGAAACAGAAAACCAGAGAATGGTTTTGAGATTCGGTTCTCA ACTCGACCAGAGTTTGAAAGACCTGCACAGGACCGTTCTGGGTTCGGTTTCTCAACAACAGCATCAGATGAGAAGCATGGAAGAACATGCTCAATCATTC CTCGCTAGTAAATGTGATGCAACCAAGGACTTAGAATTACGAATAAAGAAGATGGCAGATACATTTTCTTCAGGACTGGAGTCCTTGAAGAAATTTGCTG ATAATATGAGGGAAAAGTCTTCTTCTGACATGAAGCAGTTGAACAATACAATCTCATCCCAGGTGACAGCTAGTGAACAGTTCTTGGCGAGCACTGTATT AGAGGCCAAAGGAACTATCGAAGACATCCAGAACACGTTACGAGATCACAAACAACTATTATCTTTTTCCACTCAACAACAAGAGAAGGGACTAGAAAGA AGCTTGAGACATGCTCAAACGATAACAAAGGCAACATTGGACTTCTTCAATGACATCAATGTTCAGGCTTGTAAAGTTACAACTGTTCTTGAAGAAAGCC AAATCAAACAGTCTGATTTGTTAAGCAATTTCCAGATGACGTTTCAAGAGGAGACAGTCAGAGAAGATAAACAAGCTCTGGAAGATATAACTAAAATACT CAGGAACTTGACATCTAAAAGGACAACTATGGTAGCGGAGGCATCCAGGAACATTGAAGGGCTGAGAACAGAGGAACATAGGAAAATACTACAAGAAATG AACTACATTCACCAGATTTCAACAGATGCTAATGATGAGATGACCAGATACGCACAAGATGTTAACAAAAACTTCACAGAGGATACGTTTTCAGTCGCCG AGTCAAGGGTGATCATGAAAGATTCCATCCGTGAATGTTCAAAGAAAGTGAATTGCTCTAGGGAAGAGTGGGAAAATGCGCTATCAAATGCAAGCAATCT CAATCAAAGCATGTTGATAGGGATAGGATCTGTTGTGAGGGAGAAGAATGACGCTAATAACGCTGCTCATCAAGAATTCTTGTCTGTATCCTCTGCCGTT GATGAAGACATCAGTGCCAGAACTGTTGATGTTATCGGAACTGTTCAAGATACCTTGAGGAGAGACAAGGAGAATGCTAATGAAGTGGACGCCATGACTG CATTATGCATGAATCAACTCAAGTCCATACAAGAGAACCATGGCGAAAGCGTAGCGAACATCAGAAACAAAGCAGAGAAATGCCTCACGCGGGAGTATCA GGTAGACGAGGACACGAGTTCAAGGCCGGAAAAGAGGGTGATATCGGCACCAAGCTTGTCATCCATTGAGAGGATGAGAATGTCGTTCGCCAGTGGAAGT ATGAAAGAAGAAGGGGAAGAAAATATGTCGTCGTCGCCGAAATGGAGCCCTCACAGTCGTCATTATCATTGTAACTCAGAGAGCAAGATTCCAGCAGCTG CATTGCTGCTCAATAGTAGAGCTCCTCTAGGTGATCTCAATTAG
AA sequence Show only first row Show all	>Lus10024429 pacid=23175034 polypeptide=Lus10024429 locus=Lus10024429.g ID=Lus10024429.BGIv1.0 annot-version=v1.0 MSATAAISLSISPLTRQSVAVAAFNPLRSSSSSSFSTVSVCLPAALRLSSLSPSVSLRNPSFRVLATSMSTHAPEQTSPTAFLDRRESGVLHFVKYHGLG NDFILVDNRDSTEPKVTPEQAKKLCDRNFGIGADGVIFAMPGTNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGNHSFKVHTGAGLIVPEIQ DDGKVRVDMGEPILKAADVPTGLPANKQEAAVESELDIDGVTWNVTCVSMGNPHCVTFGTKENKDLQVDELNLAEIGPKFEKHVMFPARTNTEFVQVYSP SHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRRCTVDLPGGPLEIEWSAEDNRIYMTGPAEVLIQNQRPFGKAKPAQAVNEVLSPPASSLGTRKA GLGVVPSPCPFLTPRPERRRPDSRGSDWSSIRQDRDKEVNVQVLLRCRPLSDEEQRANVAKAISCNEQRKEVTVLQSVANKQVDRAFTFDKVFGPKAQQR AIYDQAISPIVKEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQKADYSMKVTFLELYNEEIADLLATEDNARFVD DRQKKPISLMEDGRGCVVVRGLEEEVVYSANDIYTLLERGAAKRRTADTLLNKRSSRSHSIFSITVHIKEANIGDEELIKCGKLNLVDLAGSENISRSGA REGRAREAGEINKSLLTLGRVINALAEHTAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSGHSLEETLSTLDYAHRAKNIRNKPEANQKISKAVLLKD LLLEIDRMKEDVRAARERNGVYVPHDRFSMEEAEKKARIQKIEQLEVDLNLSEKEVARFRELYLSEQEDKLEMQSEIKECKVNLEKTNKELLDLRENHRV AISTLNEKESIISKLLYSENSLIERAKELSHDLHSASEDITSLFTTLDQKDEMETENQRMVLRFGSQLDQSLKDLHRTVLGSVSQQQHQMRSMEEHAQSF LASKCDATKDLELRIKKMADTFSSGLESLKKFADNMREKSSSDMKQLNNTISSQVTASEQFLASTVLEAKGTIEDIQNTLRDHKQLLSFSTQQQEKGLER SLRHAQTITKATLDFFNDINVQACKVTTVLEESQIKQSDLLSNFQMTFQEETVREDKQALEDITKILRNLTSKRTTMVAEASRNIEGLRTEEHRKILQEM NYIHQISTDANDEMTRYAQDVNKNFTEDTFSVAESRVIMKDSIRECSKKVNCSREEWENALSNASNLNQSMLIGIGSVVREKNDANNAAHQEFLSVSSAV DEDISARTVDVIGTVQDTLRRDKENANEVDAMTALCMNQLKSIQENHGESVANIRNKAEKCLTREYQVDEDTSSRPEKRVISAPSLSSIERMRMSFASGS MKEEGEENMSSSPKWSPHSRHYHCNSESKIPAAALLLNSRAPLGDLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	0	1
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	1.0	0.9849
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	1.7	0.9791
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	2.0	0.9763
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	2.8	0.9812
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	4.2	0.9726
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	4.5	0.9754
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	4.9	0.9707
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	6.0	0.9599
					Lus10027307 [exp]	6.8	0.9556
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	7.0	0.9711

Compare expression of checked genes

Lus10024429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.