Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53570 731 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 621 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 521 / 0 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 174 / 2e-47 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 163 / 1e-43 Protein kinase superfamily protein (.1.2) AT3G53640 159 / 1e-42 Protein kinase superfamily protein (.1) AT2G17530 155 / 1e-42 Protein kinase superfamily protein (.1.2.3) AT3G25840 158 / 4e-42 Protein kinase superfamily protein (.1.2) AT3G17750 159 / 7e-42 Protein kinase superfamily protein (.1) AT1G73460 157 / 2e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025301 [exp] 845 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 640 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 638 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 603 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 263 / 1e-85 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 188 / 1e-57 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 171 / 6e-46 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 169 / 2e-45 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 162 / 5e-43 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079900 [exp] 751 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 731 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 635 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 630 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 604 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G244400 [exp] 558 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 174 / 5e-47 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 174 / 5e-47 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G188400 [exp] 166 / 1e-44 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.010G126900 [exp] 164 / 1e-43 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024431 pacid=23174924 polypeptide=Lus10024431 locus=Lus10024431.g ID=Lus10024431.BGIv1.0 annot-version=v1.0 ATGGAGACGCAAAGGATCACAGAATTCCCGCATCGGAACGTGGATAAGCGTCCAAAGAAGAGGCCTCGGTTAACATGGGATATGCCACCTCCTTTTCTTC CTCCCCCTTATCCTCCACATCTTCCAGCTGCTGCTCCAAAGGTGCTTCCGGCAGTTTACTTTGGGCAGGAGTTTGGGAATGGAGGTGGAATACAGAATTA TACGTATCCCAGTTTCTTTTACAGGGATCTTCAGGTTCCTCGCAACGTCTCTCCCCCGTGGAGGCCAGATGATAAAGATGGCCATTATGTATTCGCCATT GGGGATAGCTTAACACCTCGCTACAAGATTCTTAGCAAAATGGGTGAAGGAACATTTGGGCAGGTATTGGAATGCTTTGATAATGAAAAGAGAGAAGGTG TGGCGATCAAAATTGTCCGCTCGATACACAAATATCGTGAAGCAGCAATGATTGAAATCGACGTTCTTCAAAGGCTTGCAAGGCATGATGTTGGGGGACG ACGTTGTGTTCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGGAAAAAC AACTACAGATCTTTTCCTATTGATCTTGTGCGGGAGCTCGGCAGACAACTTTTGGAGTCTGTTGCATTTATGCATGATTTGCGTTTGATTCATACTGATC TGAAGCCGGAGAATGTTCTGCTCCTTTCTTCTGATTCTGTCAAAGTACCAGACTACAAGTTTCTATCACGATCAATAAAGGATGGATCTTATTTTAAAAA CCTACCCAAGTCAAGTGCTATCAAGTTGATTGATTTTGGGAGCACAACGTTTGAACATCAAGATCACAGCTATGTGGTGTCTACTCGGCATTACCGTGCA CCAGAGGTTATATTAGGCCTTGGATGGAACTACCCCTGTGACTTGTGGAGCATTGGTTGCATACTAGTTGAATTATGTTCTGGTGAGGCCCTTTTCCAGA CACATGAGAATTTGGAGCATCTGGCTATGATGGAGAGAGTTTTAGGCCCATTGCCCCAGCATATGAGGGTCAGAGCTGATCGTCGTGCAGAGAAATATTT CCGCCGGGGTGTTAGGCTGGATTGGCCTGAGGGTGCAACCTCTAGAGAAAGCATGAAGGCAGTTTGGAAGCTGCCTCGACTGCCGAACCTAGTAATGCAG CATGTAGATCACTCTGCTGGTGACTTAATCGATCTCTTACAAGGTCTACTGAGATATGATCCAGCAGAGAGGCTTAAAGCACGAGAAGCGCTGCGGCATC CCTTCTTCAGAAGAGACCCGAGAAGGTGCGGTGGCTATTCCTTGTGA
AA sequence Show only first row Show all	>Lus10024431 pacid=23174924 polypeptide=Lus10024431 locus=Lus10024431.g ID=Lus10024431.BGIv1.0 annot-version=v1.0 METQRITEFPHRNVDKRPKKRPRLTWDMPPPFLPPPYPPHLPAAAPKVLPAVYFGQEFGNGGGIQNYTYPSFFYRDLQVPRNVSPPWRPDDKDGHYVFAI GDSLTPRYKILSKMGEGTFGQVLECFDNEKREGVAIKIVRSIHKYREAAMIEIDVLQRLARHDVGGRRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKN NYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENVLLLSSDSVKVPDYKFLSRSIKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRA PEVILGLGWNYPCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQHMRVRADRRAEKYFRRGVRLDWPEGATSRESMKAVWKLPRLPNLVMQ HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFRRDPRRCGGYSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	0	1
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	6.0	0.8547
AT4G33380			unknown protein		Lus10009765 [exp]	6.7	0.8660
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	8.7	0.8643
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	9.7	0.8776
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	12.3	0.8600
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	13.1	0.8671
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	14.8	0.8246
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	16.1	0.8393
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	19.4	0.8263
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028312 [exp]	19.8	0.8187

Compare expression of checked genes

Lus10024431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.