Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53560 258 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 255 / 5e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 206 / 3e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 172 / 8e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18420 142 / 8e-40 Protein prenylyltransferase superfamily protein (.1) AT4G39470 140 / 7e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025299 [exp] 586 / 0 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031923 [exp] 114 / 4e-29 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035707 [exp] 104 / 1e-25 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035087 [exp] 67 / 3e-13 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080000 [exp] 314 / 4e-106 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 304 / 3e-102 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079200 [exp] 142 / 4e-39 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 138 / 8e-38 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G143600 [exp] 125 / 4e-33 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.010G098500 [exp] 122 / 5e-32 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.016G081200 [exp] 112 / 4e-31 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G142980 [exp] 88 / 1e-20 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024433 pacid=23174996 polypeptide=Lus10024433 locus=Lus10024433.g ID=Lus10024433.BGIv1.0 annot-version=v1.0 ATGGATTCTCTGAACTTAATCAATCGCTCTTGCCAACCTCTTCTCCATTTGTCCCTCGCACCTCACCGCCTTTCTTTACCTATTTCTTCACTATCTTTCC AAACCCTTCCTCCGACTTCCTCTTCCTTATCCACCGTCAGAGCTTCATCCACCGGCGCTCCGCTCCATCGTAACCCTAAATCCTCCCTTACCGAATCCCT AGCACCTTTCTTCAAAGCTACATCCGTCACACTCACCGCGGCCGCCGCATTGCTGCTCTTCCAGCTGCATGCCAAGCCATCGATCGCGTCTCCGATCGCC GAGTCTGCCACGGTCGAGCCAGCTTCCGAAGAAACCGATTCGAACGAAGAAAGGCCCGATGTTCCGATTGAAGACCAAGAGAGGACTCTGGAGGAGCTAC TGCAGCAAAAACCAAACGACATCGACGCCTTAAGAGCTCTAATGGATGTGAAAATCAAGGCTCGCAAGATTCCCGAAGCGATTAGGTTAGTCGACCGCCT GATAGCTCTTGAGCCGAATGACAGCGAGTGGCCGCTGCTGAAGGCACAAATCTATACCTACGGCGGCGACAACGAATCTTCAAGAAAGTTGTACGAAGAA ATCTTGCAGAAGGATCCGGTCTGCGTGGAGGCGTATCACGGCCTATTGACGGCGCGTGCAGAGGACGGGATGTCCACCGGCGATGTGCTGAAAAGAGTGG AAGAGGCGATGAAAATTTGCAAGAAGGACAAGGCGAGGGACTTCAAGTTACTGATTGGGCAGGTGAGAGTGATGGAGGAGAAGTATGATGAAGCTCTGGA CGTGTACGAGGAGTTGGTGAAGGAGGAGCCTACAGACTTCAGGCCGTATTTGTGCCTAGGGATCATTTACACTCTGATGAGGAGGATGGACATGGCAGCG GAGAAGTTTGAGCAGTTCAAGAGACTGGTTCCCAAGAACCATCCATGCAGAGAGTTTTACCTGAAGAATATGTTCGGCTCCAGTTTCTTTGCGGATGAGA AGCTGAGCGGAATTGCAAGGTGA
AA sequence Show only first row Show all	>Lus10024433 pacid=23174996 polypeptide=Lus10024433 locus=Lus10024433.g ID=Lus10024433.BGIv1.0 annot-version=v1.0 MDSLNLINRSCQPLLHLSLAPHRLSLPISSLSFQTLPPTSSSLSTVRASSTGAPLHRNPKSSLTESLAPFFKATSVTLTAAAALLLFQLHAKPSIASPIA ESATVEPASEETDSNEERPDVPIEDQERTLEELLQQKPNDIDALRALMDVKIKARKIPEAIRLVDRLIALEPNDSEWPLLKAQIYTYGGDNESSRKLYEE ILQKDPVCVEAYHGLLTARAEDGMSTGDVLKRVEEAMKICKKDKARDFKLLIGQVRVMEEKYDEALDVYEELVKEEPTDFRPYLCLGIIYTLMRRMDMAA EKFEQFKRLVPKNHPCREFYLKNMFGSSFFADEKLSGIAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	1.7	0.8998
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	2.2	0.8889
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	2.2	0.9195
AT2G02590			unknown protein		Lus10013278 [exp]	5.2	0.8817
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	5.7	0.8899
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	5.7	0.9030
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	8.4	0.8666
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	8.5	0.8721
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	8.9	0.8778
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	10.0	0.8490

Compare expression of checked genes

Lus10024433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.