Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53540 414 / 6e-131 unknown protein AT4G28760 119 / 2e-27 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G39435 103 / 5e-23 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT5G43880 85 / 1e-16 Protein of unknown function (DUF3741) (.1) AT2G20240 75 / 2e-13 Protein of unknown function (DUF3741) (.1) AT3G58650 45 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025296 [exp] 1506 / 0 AT3G53540 456 / 7e-146 unknown protein Lus10025295 [exp] 185 / 6e-55 AT3G53540 67 / 2e-14 unknown protein Lus10022843 [exp] 111 / 6e-25 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10003295 [exp] 108 / 2e-24 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10011911 [exp] 99 / 8e-21 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10030320 [exp] 91 / 1e-18 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10002008 [exp] 56 / 1e-07 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 55 / 3e-07 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10021148 [exp] 51 / 4e-06 AT1G74160 236 / 9e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213700 [exp] 645 / 0 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 580 / 0 AT3G53540 234 / 1e-64 unknown protein Potri.010G211700 [exp] 214 / 8e-58 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.002G253600 [exp] 167 / 3e-42 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 99 / 5e-21 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G103400 [exp] 69 / 9e-12 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.012G061900 [exp] 53 / 8e-07 AT1G74160 730 / 0.0 unknown protein Potri.001G239500 [exp] 52 / 1e-06 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G084600 [exp] 50 / 7e-06 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 49 / 1e-05 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10024434 pacid=23175016 polypeptide=Lus10024434 locus=Lus10024434.g ID=Lus10024434.BGIv1.0 annot-version=v1.0 ATGTCAAGGGAAACCGAATCCAAGAAAAGGCCACCTAGCATCATTGCTAGACTGATGGGCCTTGACGGTATGCCTTCTCAACAGCCAACATACAAACAAG AACGGAGGTCTTCAGAAAACACCATGAAGAGAACAGTCCCAACTGAGAAGCCTCACAACAGGGTTACCGCATCAAGTAGCGGTGGGTCTTCCAGGAAAAG CTCAAGGGGGGAGCAGGAGTTTAAAGATGTCTACGAAGTCTTAGAATTATCCAGAAAGGCTGGTGAACTCTCTTGTCCACTTGGGTCTGCAAACTCCAAG GCCGCAGAAGCTGAGATGGCATTCATTCAGCAAAGGTTCATGGATGCTAAACGCCTTTCGACTGACGGAAAACTTCAGGACTCGAAGGAATTTCATGATA CAATTGAGGATCTAAACTCCAACCAGGATCTTTTATTGAGATTCCTTGAAAATCCGGATTCAATGTTCACAAAGCATACCCGTGAACTTCATGGCGCCAG TCACAGATCACGGGTAAAGGTGTCACATACTGAAGAATGCAAAGGCAACACTGAGAAAGAAACGGCTAGGAAAAGTCGGAGAAGGCCGAACGAAGATCGT TGCAACCATCCTTACTTGAAACAGGCTGGCCAAGTTACTGTCAAGGCATCTAAAGTGCAATTCGAGGAGAAAGAAAAGTCGAAAGTTCTTCCTACTAAGA TTGTTGTCCTCAAACCAAACCTTGCACGACTGCAAAACAGTGGCAAATCCATTTCATCACCTTGTTCTTCTCATTCTAGTCGGCATGTTGAACTTCCTTT CACGAGGAGAAGGGAATCGGAAAAGAATAAGTATGCTGATGATGTTAGACCTTCAAGATACGTGTCTGGAGACCTTCAAGATAGTTTTAGTGGTAGTTCC ATTAGTTTTCGAACTGCAGCTGGGGTCAGGGGATATGCAGGGGACGAGAGTTCATCCTGCAGGTCCGGGTATGAGTCAGCAAACGAATCAGATGTGACGA TGGTCCCTTCTAGACATTCTTTTGAAAGGAGCAGTCGTTACCGTGGTTCACCATCCCGACCCACCGAGTCATCTGTTAGTAGAGAGGCGAGGAAGAGACT GTCAGAGAGGTGGAAGATGACTCATAAGTCTGTAGACATGGGAGAAGTGAGCAGGAGCAGCACACTGGGTGAAATGCTTGCAATCACGGATAGGAATGCT AAACCTGCTAACTCGGCTTCCATGGGTTCGCAAAAGTCCACTGCCAAACTTAGCAGGAACAATGATGCTGCTCCAAACTTACATGAACCTTTGGGTATTA GCAGTAGGGATGGTTGGAAAGATCCATTCTTTGAAAGTCTGCCGAGATCAAAATCAGTTCCTGCTTCACCTGTTGGTGGTGTAGGTAGTCCTCAAGTTGC TTCACATGGTAGAACAGCTTACGACAAGATGGCGAAAGGAAACCTTAGTCAGGTACAAGGCTTATCTTCTAGAACTCCAAGAGCTCGAAGTAGGAAATCC ATTACTCTTATACGTACTTATAGGGATGAAGGAGACACATCGCCGGAGTCCCCTCTCAGTTACATTAACTTGCAGAAGACTATGTCAACGCATAATCATT TTCAACAGAGTCAATTGGTTTATGAGGGATCAACAGGAGACTCGGGGTTACTTCTGGAAACCGGTAGCTCTGATGCTGATCATGCAATCGAGAATGCGAT CAGTTGTTCTACAGCAGTCAATCCAGAACTACCAGCTGACTTGGAGCCATTTAGTTCACAGGAACAAATTGGACCACCACCTCAAAGCTGTTCAACTCCT GTAACCCGTCCTATATGCGAACCAGAATCGTCAGCAAGCTCAAAGGAGGCCGACCAACCCAGCCCCGTATCAGTTCTCGAAACCAACTTCTCAGATAACT TGTCCTCTAACTCCGATTGCTTCGAGAGTTTAAGTGCTGATCTCCAAGGGCTTCGGATGCAACTTAAGCTACTAAAGTTAGAGTCCGAAACTTACGAGGA AGGACCCATGCTCGTCTCGAGCGACGAAGAAGAAGACGAACTTCGCGAAGGCTCTGCTCCAGCTCACGAAGGAAGCGCCAAACTTTCTTACATCACCGAT GTATTGCTAAACTCCGGCATTAATGATGCCGATCCCAACACGTTCACATCGACATTACACACTTCAGAATGCCCCGTGAGCTCTTCGGTGTTCGAGGAGC TCGAGAAGAAGAAGAAATATTGCAACGATAATGTGGGTTGGTCGAGGGCCGAGAGGAGGATGCTTTTCAACCAGATAAACTCTGCTCTTATGGTTATAAA CCGGGAGTTCAACGATCCGCACCCCTGGGTAGTAAGGGTTGGAGCGAAAATCGGTACGAAATGGGTTCATCGGAATGGACTGAACGATGGTGTGTACAAG GTGATTCTGAGCCGGGGTAAGAGGGACGAAAAGGAGGTGGAAGATGAGCAAGTGATGTTGGGTGAAGAGCAGTGGTTAGATTTAAGGAGCGAGATCGATG CGATCGGGAGAGAGATCGAGGGAGTTTTAGTAGATGATTTAGTAACTGAGCTTGTAGCAGTAGTGTAG
AA sequence Show only first row Show all	>Lus10024434 pacid=23175016 polypeptide=Lus10024434 locus=Lus10024434.g ID=Lus10024434.BGIv1.0 annot-version=v1.0 MSRETESKKRPPSIIARLMGLDGMPSQQPTYKQERRSSENTMKRTVPTEKPHNRVTASSSGGSSRKSSRGEQEFKDVYEVLELSRKAGELSCPLGSANSK AAEAEMAFIQQRFMDAKRLSTDGKLQDSKEFHDTIEDLNSNQDLLLRFLENPDSMFTKHTRELHGASHRSRVKVSHTEECKGNTEKETARKSRRRPNEDR CNHPYLKQAGQVTVKASKVQFEEKEKSKVLPTKIVVLKPNLARLQNSGKSISSPCSSHSSRHVELPFTRRRESEKNKYADDVRPSRYVSGDLQDSFSGSS ISFRTAAGVRGYAGDESSSCRSGYESANESDVTMVPSRHSFERSSRYRGSPSRPTESSVSREARKRLSERWKMTHKSVDMGEVSRSSTLGEMLAITDRNA KPANSASMGSQKSTAKLSRNNDAAPNLHEPLGISSRDGWKDPFFESLPRSKSVPASPVGGVGSPQVASHGRTAYDKMAKGNLSQVQGLSSRTPRARSRKS ITLIRTYRDEGDTSPESPLSYINLQKTMSTHNHFQQSQLVYEGSTGDSGLLLETGSSDADHAIENAISCSTAVNPELPADLEPFSSQEQIGPPPQSCSTP VTRPICEPESSASSKEADQPSPVSVLETNFSDNLSSNSDCFESLSADLQGLRMQLKLLKLESETYEEGPMLVSSDEEEDELREGSAPAHEGSAKLSYITD VLLNSGINDADPNTFTSTLHTSECPVSSSVFEELEKKKKYCNDNVGWSRAERRMLFNQINSALMVINREFNDPHPWVVRVGAKIGTKWVHRNGLNDGVYK VILSRGKRDEKEVEDEQVMLGEEQWLDLRSEIDAIGREIEGVLVDDLVTELVAVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53540			unknown protein		Lus10024434 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10019825 [exp]	1.4	0.8383
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	12.0	0.7797
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	12.2	0.7987
AT5G48500			unknown protein		Lus10020403 [exp]	13.4	0.7727
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	13.9	0.7925
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	14.3	0.8172
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	15.2	0.7900
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	15.3	0.7734
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	15.7	0.7936
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	20.5	0.7925

Compare expression of checked genes

Lus10024434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.