Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37390 114 / 5e-30 NAKR2 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) AT3G53530 109 / 4e-28 NAKR3 SODIUM POTASSIUM ROOT DEFECTIVE 3, Chloroplast-targeted copper chaperone protein (.1.2) AT5G02600 100 / 3e-24 NPCC6, NAKR1 nuclear-enriched phloem companion cell gene 6, SODIUM POTASSIUM ROOT DEFECTIVE 1, Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28660 92 / 2e-21 Chloroplast-targeted copper chaperone protein (.1) AT3G24450 79 / 6e-18 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 76 / 3e-17 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT3G56240 68 / 6e-14 ATX1, CCH copper chaperone (.1) AT3G56891 67 / 3e-13 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 64 / 2e-12 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 65 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025294 [exp] 446 / 6e-159 AT2G37390 141 / 3e-40 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10005875 [exp] 103 / 3e-25 AT2G28660 109 / 4e-28 Chloroplast-targeted copper chaperone protein (.1) Lus10040870 [exp] 101 / 2e-24 AT2G28660 110 / 2e-28 Chloroplast-targeted copper chaperone protein (.1) Lus10017730 [exp] 84 / 2e-19 AT3G24450 134 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1) Lus10028859 [exp] 73 / 2e-15 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3) Lus10043444 [exp] 71 / 4e-15 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10032446 [exp] 64 / 4e-12 AT1G71050 175 / 2e-56 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 64 / 5e-12 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 63 / 6e-12 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080400 [exp] 174 / 9e-53 AT2G37390 133 / 2e-37 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.006G213900 [exp] 128 / 6e-35 AT2G37390 127 / 2e-35 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.001G234700 [exp] 101 / 6e-25 AT2G37390 114 / 2e-30 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.018G076400 [exp] 85 / 4e-20 AT3G24450 151 / 4e-48 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G236500 [exp] 72 / 8e-16 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3) Potri.008G023800 [exp] 71 / 2e-15 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.010G114600 [exp] 66 / 3e-13 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 64 / 2e-12 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 62 / 8e-12 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 61 / 2e-11 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10024435 pacid=23174908 polypeptide=Lus10024435 locus=Lus10024435.g ID=Lus10024435.BGIv1.0 annot-version=v1.0 ATGAAACGAATCGATATCTTCTGCGCCTCTCAATCCTCCACCGCCATTTGCATGACCATGGACGACCAACCTTCTTCTTCCTCCTCCGGCACCGCCGCCG CCGCTCAGCTCGGCGGCAGAGCAATCGACCGCCACAACCCAATAATCAGAGACCTAAGAAGAGCCCCTAGAGTCCTTCCTATCAATCCTCCTTGTACTTC TTCCCACCTCCCTCCTATCACCCCACTCCCTTACCATAAACTTGACCAGACCAAAACCAACAACAAAAAACCGAAAAAGTCCAAGGAAACCAACCCGATC CCCAAGACCAAGAAGAAGAAGAAACAGAGTACTGCTAGTACTACTGATGATCAGACCCTCCAAAAGGGCAAGAAAATATATTCTTCTCCACCACCTTCTT CATCTGCTTATGATTATTACTCGGCGAGTAAGAGTTGGAGTACCAATATTGGTTTGAATTTGGTCACTCCAGCTGGTTCTTCTAGATATCTATTGAGCGA CTCGATTCTCTTTGATGGCTTCTCGGATCTTGACCCGGTTCCCCAACCCGACTCAGATCAACCGGAAAAGGTTGCGACTTTGGATGTAATACCAGCTGAA GATGGCAGCCCAGTTCTTATTTCTTCCCCAAGAGCTCCATCTCCTCCTTTGGAGAAGCCATTAAACCAGATAGTGGAGCTGAGAGTGTCACTACACTGCA AAGGGTGTGAAGGGAAAGTGAGGAAACATCTTTCCAAAATGGAAGGGGTGAAATCATTCAAGATAGATTTTGCAGCAAAGAAAGTGACGATAGAGGGAGA GCTGAGTCCATCGGAAGTTCTGGAAAGACTGTCCAAGGTGAAGAAGAACGCCCAGTTTTGGACCTCTGATCAAACTACCCCAATTAATCCTGCAGCTTCT CCCTACGGTACCAATTTCGACATCAGGAAATGA
AA sequence Show only first row Show all	>Lus10024435 pacid=23174908 polypeptide=Lus10024435 locus=Lus10024435.g ID=Lus10024435.BGIv1.0 annot-version=v1.0 MKRIDIFCASQSSTAICMTMDDQPSSSSSGTAAAAQLGGRAIDRHNPIIRDLRRAPRVLPINPPCTSSHLPPITPLPYHKLDQTKTNNKKPKKSKETNPI PKTKKKKKQSTASTTDDQTLQKGKKIYSSPPPSSSAYDYYSASKSWSTNIGLNLVTPAGSSRYLLSDSILFDGFSDLDPVPQPDSDQPEKVATLDVIPAE DGSPVLISSPRAPSPPLEKPLNQIVELRVSLHCKGCEGKVRKHLSKMEGVKSFKIDFAAKKVTIEGELSPSEVLERLSKVKKNAQFWTSDQTTPINPAAS PYGTNFDIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	0	1
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10025294 [exp]	1.4	0.9052
AT2G34540			unknown protein		Lus10028123 [exp]	3.9	0.8937
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	6.5	0.9066
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	7.1	0.8747
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	7.4	0.8719
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10014301 [exp]	15.6	0.8644
AT3G44716			unknown protein		Lus10020554 [exp]	16.3	0.8716
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	21.3	0.8872
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	21.8	0.8840
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	26.3	0.8809

Compare expression of checked genes

Lus10024435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.