Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09520 560 / 0 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT2G39380 501 / 1e-170 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G55150 478 / 1e-161 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09530 466 / 8e-157 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT5G59730 441 / 4e-147 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G28640 380 / 4e-124 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 371 / 2e-120 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28650 336 / 2e-107 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT3G14090 264 / 3e-79 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 263 / 6e-79 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025291 [exp] 1023 / 0 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10005436 [exp] 475 / 2e-160 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 459 / 3e-154 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 454 / 4e-152 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 440 / 9e-147 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040329 [exp] 404 / 7e-133 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 382 / 2e-124 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 380 / 1e-123 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 360 / 2e-116 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214300 [exp] 679 / 0 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.009G026900 [exp] 514 / 5e-176 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 505 / 2e-172 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.010G212400 [exp] 497 / 3e-169 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 493 / 1e-167 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.015G094800 [exp] 270 / 3e-81 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 268 / 1e-80 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 264 / 6e-79 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 262 / 1e-78 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 252 / 6e-75 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10024438 pacid=23174999 polypeptide=Lus10024438 locus=Lus10024438.g ID=Lus10024438.BGIv1.0 annot-version=v1.0 ATGCCTAGGAAAGGGATGAGGAGCATTTGTTTCAGCCCTAGAACGCCGTCGTTCGCTGCCGCCGCACCAAACAACTCACCACTCTCTTCCCCAGCCAGAA GCTCAATCTCGGGACTCTCAACTCCCCGCCTCAGCTTCTCCGACTACCGAACCGAACAAATCATCGAAGGTGCTTCCGCCTTGATCACCAAATGGGACCC TGAAACGTCTCCGTATGCCAAAGTCACCTCTCTTTTCTACGAGAGCAAGCGAGAAGCCGCCCAATTCCTCAAGTGCCTCACCGACCTCCAAAAAGCAATG GGCCTCCTATCCGCCCAAGATTCCAAAGACGGCCGCCTCGTTCGAGCCCAGAATCTTATGCAGATCGGAATGAAACGCCTCCAGAAGGAATTCTACCAAA TCCTCTCCACCAACCGGTCCCACCTCGACCCCGAATCCATCTCCACCCGCTCCTCCACCACCTCCGCCAGATCCAGCGTCTCCGATTACGACGGGGACGA TGGCGTCGCCGCCGGCGACGCCATCGCCGAAGTGGAAGAGGTCTCGTCGATTGCGATGGGGGATCTTAGATCGATCGCCGAGTGCATGATCTCCTCCGGC TACGCTAAAGAGTGTGTGAGCATTTACAAGGTGATCCGGAAATCAATCGTCGACGAAGGGATTTATCGGCTGGGAGTTGAGAAAATCGGTTCGGTCAGCA AGATGAGCTGGGAATCGGTCGAGTTGCGGGTCAAGGCTTGGCTTGAGGCGGTTAAGGTTGCGGTTCGCACGCTTTTCAACGGGGAGCGGATCCTCTGCGA CCACGTCTTCGCTGCGTTCGATTCCGTTAGAGAGTCCTGCTTTGCGGAAATATCAAAAGACGGAGCTACCCTCCTGTTTGGATTCCCCGAACTGGTTGCT AAAAAAGCTAAGAAAACGGCGTCGTCCTCCCCGCCGGATAGGATCTTCAGGTTGCTTGATATGTACGCTGCCATTTCGGAAAATTGGATGGAGATCGAGT CAATCTTTTCGTCCGAGTCAACCTCAGCCGTCCGATCGCAAGCTATCAACTCGCTCACCAAACTTGGCGAGTCAATCAGAGGAAACCTCGCCGAGTTCGA ATCCACCGTGCAGAAAGACTCGTCAAAATCTCCGGTTCCCGGCAGCGGAGTTCATCCTCTGACTTTATACACCGCCGACTTCCTGTCCCTGCTCTCCGAC TACAGCGCAATCCTCGCCGACATTCTACAGGACTGGCATCCACCGCCGAGATCATCTCCGTTGACGGAATCCTTCTTCGACAGTCCGAAGTCCTCCGTCA ACGAATCTCAGCCGCCGCCGGCGCTATCAACTCGGATAGCGTGGCTGATCGTCGTCCTGCTCGCTAAGCTCGACGTTAAAGCCAAACAATACAAGGAAGT ATCGCTGTCGTATCTATTCCTAGCGAACAATGTGAGACACGTGGTTCTCAAGGTCCGGACATCAAACCTGCAGTTTATATTGGGAGAGGAGTGGATCGCG AAACACGATGGTAAGGTGAGGCAGTTCGCAGCGAATTACGAGCGACTGGCGTGGGGCAAATTGGCGGAAGGGATACCGGAGAATCCGGACTCCGCGGTAT CTGCGGAGAAGGCGAGGGAGGTGTTTAAGAGGTTCGGGGAGAGGTTCGAGGAAGCGTACAGGAAGCAAAGTTCGTGCATCGTAGACGATCCGAAGCTGAG GAGCGAGATAAAGAGGAGTATCGCGAGAAAAGTGGTGCCGAGTTACTGGGCATTCTACGATGCCAACAAGGCGACGGCGGGGACTCACAGGAACGTGAGG ATATATGTGAAGTATACGCCTGAGGATGTCGGGAAGTTATTGTCGGAGTTGTTTTTCGAGGCTATCGTTGAGGAAGAGAGTACGCCGCCGTCTTCTACTT CGTCGTCGTCTCATAATCGGCGAGGGCAGAGGGGTAGTTAG
AA sequence Show only first row Show all	>Lus10024438 pacid=23174999 polypeptide=Lus10024438 locus=Lus10024438.g ID=Lus10024438.BGIv1.0 annot-version=v1.0 MPRKGMRSICFSPRTPSFAAAAPNNSPLSSPARSSISGLSTPRLSFSDYRTEQIIEGASALITKWDPETSPYAKVTSLFYESKREAAQFLKCLTDLQKAM GLLSAQDSKDGRLVRAQNLMQIGMKRLQKEFYQILSTNRSHLDPESISTRSSTTSARSSVSDYDGDDGVAAGDAIAEVEEVSSIAMGDLRSIAECMISSG YAKECVSIYKVIRKSIVDEGIYRLGVEKIGSVSKMSWESVELRVKAWLEAVKVAVRTLFNGERILCDHVFAAFDSVRESCFAEISKDGATLLFGFPELVA KKAKKTASSSPPDRIFRLLDMYAAISENWMEIESIFSSESTSAVRSQAINSLTKLGESIRGNLAEFESTVQKDSSKSPVPGSGVHPLTLYTADFLSLLSD YSAILADILQDWHPPPRSSPLTESFFDSPKSSVNESQPPPALSTRIAWLIVVLLAKLDVKAKQYKEVSLSYLFLANNVRHVVLKVRTSNLQFILGEEWIA KHDGKVRQFAANYERLAWGKLAEGIPENPDSAVSAEKAREVFKRFGERFEEAYRKQSSCIVDDPKLRSEIKRSIARKVVPSYWAFYDANKATAGTHRNVR IYVKYTPEDVGKLLSELFFEAIVEEESTPPSSTSSSSHNRRGQRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	0	1
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	1.4	0.9955
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	2.8	0.9949
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	3.5	0.9942
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	3.5	0.9944
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	5.7	0.9913
AT4G37290			unknown protein		Lus10010255 [exp]	6.3	0.9937
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	8.5	0.9905
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	9.2	0.9926
AT4G22030			F-box family protein with a do...		Lus10020029 [exp]	9.9	0.9809
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	10.2	0.9905

Compare expression of checked genes

Lus10024438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.