Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 535 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 483 / 2e-171 Pectin lyase-like superfamily protein (.1) AT1G30350 176 / 1e-51 Pectin lyase-like superfamily protein (.1) AT5G55720 174 / 1e-50 Pectin lyase-like superfamily protein (.1) AT1G11920 167 / 4e-48 Pectin lyase-like superfamily protein (.1) AT3G54920 167 / 7e-47 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G27400 158 / 3e-44 Pectin lyase-like superfamily protein (.1) AT2G02720 158 / 7e-44 Pectate lyase family protein (.1) AT5G04310 158 / 1e-43 Pectin lyase-like superfamily protein (.1) AT4G13710 157 / 1e-43 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025290 [exp] 691 / 0 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10030313 [exp] 496 / 2e-177 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10003307 [exp] 487 / 1e-173 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 165 / 4e-47 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 157 / 5e-44 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 155 / 3e-43 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10005254 [exp] 154 / 2e-42 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 153 / 3e-42 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 152 / 7e-42 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080600 [exp] 577 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G214400 [exp] 569 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G048600 [exp] 520 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008000 [exp] 163 / 2e-46 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 159 / 1e-44 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.008G148800 [exp] 156 / 2e-43 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.004G007300 [exp] 155 / 3e-43 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.012G091500 [exp] 153 / 2e-42 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 152 / 3e-42 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 151 / 1e-41 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10024439 pacid=23174911 polypeptide=Lus10024439 locus=Lus10024439.g ID=Lus10024439.BGIv1.0 annot-version=v1.0 ATGGGGAACCACCACGGCCACCACAAGCATCATAACGGCGGCAGACCTAACTTTCCTGTTCCTTCTCCTCCTTTCCCTCCGCCAGCCTATATATCCGGAC CGCCGGCTATGCCTAATCAACAAGCGCCGAGCTGCTCTCCGCCGGAAATGGGAACTTCTCTGCCTTATGCTCACGTTGACTCAACCTTGCGCGCCCTCGC CGGCCAAGCTGAAGGGTTCGGCCGATTCTCCGTCGGCGGACTTCACGGCGCCCTCCATTGCGTCACCTCGTTAGCAGATGATGGGCCAGGATCTCTGAGA GAAGCATGCCGGAAGAAAGAGCCGCTATGGATTGTGTTTGAATTATCGGGCACGATTCACCTCAATTCGTATTTGAATGTCTCGTCCTATAAGACCATCG ATGGCCGGGGTCAAAGAATCAAACTCACAGGGAAAGGCTTGAGGCTCAAGGAATGTGAGCATGTGATCGTATCCAACCTGGAGTTCGAAGGCGGTAGGGG CCCCGATGTTGATGGAGTTCAGATCAAACCGAAATCGAAACACATATGGATCGACCGATGCAGCCTCAGCGATTACGACGACGGGCTGATAGACATCAGT CGCGAAAGCACTGACATTACCATCTCCAGGTGTCACTTTTCCAGACATGACAAGACCATGCTTATCGGAGCGGATGCATCGAACGTTACTGATCGATGTA TGAGGATAACTATCCACCATTGTTTCTTTGACGGGACGCGACAGAGGCATCCTCGTGTTAGATATGCGAAAGTGCATCTGTATAATAATTACACCAGGAA CTGGGGGATCTATGCTGTTTGTGCCAGTGTGGAGTCTCAGATATACTCCCAATGCAACGTATATGAAGCGGGACAGAAGAAGGTTGCGTTTAAGTACCTT ACTGAGAAGGCAACTGATAGAGAAGAACCAAGCACTGGGCAGATGAGATCAGAAGGAGACTTATTCGTTAGCGGAACTCAAGCTGGGATAATGACGGCGG CAAATGAAGCATGCATCTTTCACCCGAGCGAATACTACAGCACTTGGACGGTGCAGCCTGCAGGAGAAACTCTGAAACAGTTTATCCATGGGTGTACAGG GTGGCAGCCTGTGCCTCTGCCTGTTGATCAGCCTTTTGCTGATCAGTAA
AA sequence Show only first row Show all	>Lus10024439 pacid=23174911 polypeptide=Lus10024439 locus=Lus10024439.g ID=Lus10024439.BGIv1.0 annot-version=v1.0 MGNHHGHHKHHNGGRPNFPVPSPPFPPPAYISGPPAMPNQQAPSCSPPEMGTSLPYAHVDSTLRALAGQAEGFGRFSVGGLHGALHCVTSLADDGPGSLR EACRKKEPLWIVFELSGTIHLNSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVSNLEFEGGRGPDVDGVQIKPKSKHIWIDRCSLSDYDDGLIDIS RESTDITISRCHFSRHDKTMLIGADASNVTDRCMRITIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEAGQKKVAFKYL TEKATDREEPSTGQMRSEGDLFVSGTQAGIMTAANEACIFHPSEYYSTWTVQPAGETLKQFIHGCTGWQPVPLPVDQPFADQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	0	1
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	1.0	0.9499
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	2.0	0.9164
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	3.0	0.9249
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	3.2	0.9314
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	3.9	0.8853
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	5.2	0.8934
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	6.2	0.8906
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	6.4	0.8616
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	8.5	0.9028
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	8.7	0.9070

Compare expression of checked genes

Lus10024439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.