Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 568 / 0 Ankyrin repeat family protein (.1) AT5G02620 555 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT5G60070 538 / 0 ankyrin repeat family protein (.1) AT2G31820 461 / 5e-156 Ankyrin repeat family protein (.1) AT1G05640 445 / 3e-150 Ankyrin repeat family protein (.1) AT3G12360 330 / 3e-106 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 296 / 1e-93 Ankyrin repeat family protein (.1) AT3G09550 296 / 1e-92 Ankyrin repeat family protein (.1) AT2G24600 115 / 7e-27 Ankyrin repeat family protein (.1.2.3.4) AT1G10340 105 / 1e-23 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025289 [exp] 825 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 566 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 566 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 565 / 0 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10008329 [exp] 462 / 7e-157 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 379 / 2e-127 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 332 / 9e-107 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 330 / 2e-106 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 317 / 2e-100 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214600 [exp] 707 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 707 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 593 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 581 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 559 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 451 / 1e-152 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 450 / 8e-152 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 334 / 1e-107 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 331 / 2e-106 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 311 / 2e-99 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10024440 pacid=23174964 polypeptide=Lus10024440 locus=Lus10024440.g ID=Lus10024440.BGIv1.0 annot-version=v1.0 ATGGAGCCTCCGGCGAGGCAGCAGAAGAAAATGACCAAGCAACTGACTGCCAAACGAGACGACTCGCCCTTTCACGCCGCCGCCCGTGCCGGAAACCTAG ACCTGGTCCTGGAACTCATCGAGGAAGCCTCCGGCGACGACGATGCTGCGGAGTTGAAGAATCTGCTCGCGAAACAGAACCAGTCTGGCGAAACGGCGCT GTACGTCGCCGCCGAGTGCGGCCACGCCGACGTAGTGAAAGAGCTCATCAAGCACTACGACACCGTTTTGGCCGGGATAAAGGCCCGGAACGGTTTTGGC CGGGATGAAGGCCCGAAACGGCTACGACGCCTTCCACATCGCCGCCAAACAGGGCGATTTAGGGTTTTGCTCACTTTTAATTTATTTGGGGGGTTTTCAG AAACGTTGAGGGTACTGATGGTAGCGAATCCGGATCTGGCGATGACGTTCGATTCGTCCAATACAACAGCGCTTCACTCAGCGGCAGCGCAGGGACACGT GGAAGTCGCCGACTTCCTCCTGGAGCGATGCGGCAGCGTGGTGGCTATCGCTAAGAGCAACGGAAAAACCGCTCTCCATTCGGCGGCGAGAAATGGCCAT TTACAGATTGTGAAGTCGCTTCTAAGTAAAGACCCCGGAATCGCTACAAGAGTTGACAAGAAAGGACAGACGGCACTCCATATGGCGGTTAAAGGGCAAA ACGTTGACCTCGTTGACGAACTAGTAATGTCCGATCCTAGTTTGATCAACATGGTCGACAACAAGGGCAACATCGCCTTGCACATCGCAGCTCGCAAGGG CCGAACTCAGATTGTGAGGAAGTTGCTAGACAATCAAGGACTTGACAAAGTTACAATCAATCGGTCTGGGGAGACTGCATTCGATACTGCTGCCAAGTCC GGGCATAATGACATTACATCTATGTTGGAGAAAGAAGGCGTTCTCTCCGCCAAATCTATGAAGCCGAACGGTACGAATCAGGGTCGAGCCCTAAAGCAAA CGGTCAGTGACATTAGGTACGAGGTACACAACCAGCTTGAAACGACTCGGATAACTCGAAAACGTGTTCAGGGTATAGCCAAGAGGCTAAACAAGATGCA CACGGAAGGGCTGAACAACGCTATCAACTCGATCACAGTGGTCGCGGTCCTGATTGCAACCGTCGCGTTCGCGGCCATCTTTCAAGTCCCGGGGCAATAT GTGGACGATCCGAACAACCTTGCTCCGGGACAGTCGGCCGGAGAGGCGAGGATCGCTTCGAAGCTACCGTTCATGATCTTCATCGTGTTCGACTCCGTGG CGCTCTTCATATCGCTGGCGGTCGTGGTGGTGCAGACCTCGATTGTGGTGATAGAGAGGAAGGCGAAGAAGCAGCTGATGACGGTGATCAACAAGCTGAT GTGGCTGGCTTGCGTGCTCATATCGGTTGCGTTTCTCGCGTTGTCCTATGTCGTGGTCGGGAACAAGGCGAAATGGTTGGCGATTTGGGTAACTGTGATT GGGACGCTGATCATGACCGCGACAATAGGGACTATGTGTTATTGGGTGGTCGTGGCGAGGCTGGAGCAGAGGAACATTCGTAGATCGTCGATGAGTAGGT CGAGGTCCGGGTCGATGTCGATGATGCCGGAATCTGATCTGGAGAATGATTATAAGCTGTACGCCATCTAA
AA sequence Show only first row Show all	>Lus10024440 pacid=23174964 polypeptide=Lus10024440 locus=Lus10024440.g ID=Lus10024440.BGIv1.0 annot-version=v1.0 MEPPARQQKKMTKQLTAKRDDSPFHAAARAGNLDLVLELIEEASGDDDAAELKNLLAKQNQSGETALYVAAECGHADVVKELIKHYDTVLAGIKARNGFG RDEGPKRLRRLPHRRQTGRFRVLLTFNLFGGFSETLRVLMVANPDLAMTFDSSNTTALHSAAAQGHVEVADFLLERCGSVVAIAKSNGKTALHSAARNGH LQIVKSLLSKDPGIATRVDKKGQTALHMAVKGQNVDLVDELVMSDPSLINMVDNKGNIALHIAARKGRTQIVRKLLDNQGLDKVTINRSGETAFDTAAKS GHNDITSMLEKEGVLSAKSMKPNGTNQGRALKQTVSDIRYEVHNQLETTRITRKRVQGIAKRLNKMHTEGLNNAINSITVVAVLIATVAFAAIFQVPGQY VDDPNNLAPGQSAGEARIASKLPFMIFIVFDSVALFISLAVVVVQTSIVVIERKAKKQLMTVINKLMWLACVLISVAFLALSYVVVGNKAKWLAIWVTVI GTLIMTATIGTMCYWVVVARLEQRNIRRSSMSRSRSGSMSMMPESDLENDYKLYAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	1.7	0.9059
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	2.0	0.9141
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	2.4	0.9103
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	5.3	0.8569
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	6.0	0.8844
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	6.6	0.8644
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	6.7	0.8826
AT5G24460			unknown protein		Lus10032931 [exp]	8.5	0.8381
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	9.2	0.8625
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	11.0	0.8825

Compare expression of checked genes

Lus10024440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.