Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37380 60 / 9e-10 MAKR3 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein AT2G39370 53 / 1e-07 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025286 [exp] 395 / 1e-135 AT2G37380 88 / 2e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein Lus10040336 [exp] 46 / 3e-05 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10023461 [exp] 46 / 4e-05 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080800 [exp] 75 / 1e-14 AT2G39370 157 / 9e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.006G214700 [exp] 64 / 4e-11 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024441 pacid=23174992 polypeptide=Lus10024441 locus=Lus10024441.g ID=Lus10024441.BGIv1.0 annot-version=v1.0 ATGGCCACGCCAGATCAAGAATCCAACTGTTCCATTCACGGAGAATCCGAAGACGACGAATACATCGACATGGAAGTCAACAGCTGCTCCTCCTCCTCCA TCCATGGCGGCGAGTTCGAGTTCCAAATGTCTTCTTCTTCTTCACTCCTTGAAACCAACCACACCAACAACACTTCCCCTGCCGACGAACTCTTCTACAA AGGCAACCTCCTCCCTCTCCACCTCCCTCCCCGCCTCCAATTGGTCCAATCCCTCCTCCTCCAGTCCTCCGCTTCCACCTCCGAAACAGCCGCCGTCACT CCTGTCACTACCTCCCCGTCCGGATCGGGTCGGGTCAGCTCCGAGCTTAACCCGGACGATGACTGTTTCTTCGATTGGTCCGCCGAAACTTCCGGAGGAC GATTCCTATTGGAGGACGACGATATCCAGAATAAGAAGTCGTCCTCGTCGTCTTCGTCGTCGCCGTATTCGTGGGGGAAGAAGCTCCGGCAATCTGTTCT CTGCCAGAAGATTAAGTCCTCCAGATCTTATCTCAAAGCGCTTCTTCTCTTCCGAAACGACGAGTCGTTTGGCAGGTCAGCAACAAATTTGAAAACAGAG TCAGCGGCGAATCTTCTCTTCCGAAACGACGAGTCATCAAAAAAATTGAAAATAGAGTCGGCGGCGGCGGCGGAAGACGCGGCAGGGAAGAGAGAGTGCT TCATTAGCAAGTTTCCGAGAGTGATGGGGAGGAAGAAGATCCATACTAAGGGAAACAACAACAACAACAACAATCCGTTTGGAAGGATCGAGAATTACGA GAGGTTTGAGTACGGCAGTACGCTGAAGAAGAGGATTGAGAAGGAAATGGCGGAGGAATGCTTGGGGTTGGGGGGATTCAGCAGCAATCGGAATAGTATT AGTATTAGTACCAACAGTAATTATATGAGCCAGCAGAGGAAATCTTTCTCTGGAGCGATTCAGTGTCATGTTTCTTCTTCCTCTAAAACGACGACGTCGT CTTCGTCTACGTCTTCTTCCTCGTCGTCGTTCTCCCTAAGCTCCGACAAGCTGTATTATGATCTTCTATGGCTGAAGAAAGGCAGCGGCGGCGACAGTAC TAAGGAGATCGAGAGTTCGATCGAAGGCGCCATTGCTCACTGCAAGAAATCGAGAGAGAATGCAAAGAGCAAAGGTGCGGCGGCGGCGGGAGTTTCGCCG TTGATTCCTCGTCAAATAGAAACGCCTAAGATGTGTGTTTAG
AA sequence Show only first row Show all	>Lus10024441 pacid=23174992 polypeptide=Lus10024441 locus=Lus10024441.g ID=Lus10024441.BGIv1.0 annot-version=v1.0 MATPDQESNCSIHGESEDDEYIDMEVNSCSSSSIHGGEFEFQMSSSSSLLETNHTNNTSPADELFYKGNLLPLHLPPRLQLVQSLLLQSSASTSETAAVT PVTTSPSGSGRVSSELNPDDDCFFDWSAETSGGRFLLEDDDIQNKKSSSSSSSSPYSWGKKLRQSVLCQKIKSSRSYLKALLLFRNDESFGRSATNLKTE SAANLLFRNDESSKKLKIESAAAAEDAAGKRECFISKFPRVMGRKKIHTKGNNNNNNNPFGRIENYERFEYGSTLKKRIEKEMAEECLGLGGFSSNRNSI SISTNSNYMSQQRKSFSGAIQCHVSSSSKTTTSSSSTSSSSSSFSLSSDKLYYDLLWLKKGSGGDSTKEIESSIEGAIAHCKKSRENAKSKGAAAAGVSP LIPRQIETPKMCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	0	1
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	4.1	0.8314
AT3G25600			Calcium-binding EF-hand family...		Lus10034405 [exp]	14.8	0.8042
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	17.8	0.7923
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	29.3	0.7507
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031724 [exp]	33.0	0.7081
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	37.5	0.7668
AT5G53420			CCT motif family protein (.1.2...		Lus10027344 [exp]	39.5	0.6437
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	43.8	0.6349
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	44.0	0.7655
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10014178 [exp]	44.2	0.7363

Compare expression of checked genes

Lus10024441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.