Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47010 230 / 8e-73 unknown protein AT1G17030 190 / 2e-57 unknown protein AT2G25950 137 / 3e-40 Protein of unknown function (DUF1000) (.1) AT4G09965 59 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000888 [exp] 298 / 9e-100 AT2G47010 320 / 7e-105 unknown protein Lus10007453 [exp] 283 / 3e-93 AT2G47010 653 / 0.0 unknown protein Lus10009978 [exp] 236 / 1e-74 AT2G47010 647 / 0.0 unknown protein Lus10007454 [exp] 148 / 6e-44 AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187700 [exp] 244 / 2e-78 AT2G47010 690 / 0.0 unknown protein Potri.004G062000 [exp] 224 / 1e-70 AT1G17030 648 / 0.0 unknown protein Potri.019G076900 [exp] 222 / 2e-69 AT2G47010 587 / 0.0 unknown protein Potri.001G381600 [exp] 209 / 1e-64 AT1G17030 698 / 0.0 unknown protein Potri.001G381400 [exp] 207 / 7e-64 AT1G17030 706 / 0.0 unknown protein Potri.018G056100 [exp] 137 / 4e-40 AT2G25950 366 / 5e-131 Protein of unknown function (DUF1000) (.1) Potri.001G382000 [exp] 69 / 2e-13 AT1G17030 389 / 1e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF06201 [flax] [poplar] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Lus10024442 pacid=23170207 polypeptide=Lus10024442 locus=Lus10024442.g ID=Lus10024442.BGIv1.0 annot-version=v1.0 ATGTCTTCACTGATTTCTATTTGTTCTGTAAAACTGCACCGTGGTTTATCCTTTAACTCTATATGTAGGTTTATCAATCGAGAAGGAATTGACTTCTCCG ATGCTCAGGACATGCAAGCTATTCAGGAGTGGGAGTTGGCCGAAAATCTGCAAGGAGTGCTAGAGTACCAAACCAGATATGCCAAATTTCAGAGTGTTTC AAGCATCACGTTACACTTCCCTGAGAACTTCGGAGGTGATCTTACTCAGATACACTACATAGGATTCAAAGGTGAAGCAACTAAGCTACCAGAGTCACCA AACTTCAAGGTGAGGCTGACGTTGGACATCAAACAAGGAGGGGGGGCAAAGAGCCAGTTCTACTTGATCGACATCGGTAGCTGCTGGAAGAACGACGGAT CTCCCTGCGACGGGGATGTCTCACCGACAAACGACACTGCAAACTTCCCCTATGCAGCATACCACCTCTATTGCGCTCCGGGGAACGCCAAGTATCTCGA GCAACCAGTCAACATTTGTGATCCTTACAGCAATCCTCAGGCTCAGGAGTTGCTTCAGTTGCTGCTTCATCCCATTTGGGGAGACTATGGCTACCCGACG AAACCAGGGCAAGGTTGGACTGGTGACTCCAAGAAGAGCTGGGAGCTACATGTTGGTACCTTGTCGAGCCGCCTCTACTTTTACCAGGATCCAGGGAGTC CATCTGCAAGAAAAATTTGGACGTCCATAGATGTAGGGACTGAACTCTAA
AA sequence Show only first row Show all	>Lus10024442 pacid=23170207 polypeptide=Lus10024442 locus=Lus10024442.g ID=Lus10024442.BGIv1.0 annot-version=v1.0 MSSLISICSVKLHRGLSFNSICRFINREGIDFSDAQDMQAIQEWELAENLQGVLEYQTRYAKFQSVSSITLHFPENFGGDLTQIHYIGFKGEATKLPESP NFKVRLTLDIKQGGGAKSQFYLIDIGSCWKNDGSPCDGDVSPTNDTANFPYAAYHLYCAPGNAKYLEQPVNICDPYSNPQAQELLQLLLHPIWGDYGYPT KPGQGWTGDSKKSWELHVGTLSSRLYFYQDPGSPSARKIWTSIDVGTEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17030			unknown protein		Lus10024442 [exp]	0	1
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	3.3	0.8485
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	4.0	0.8403
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	5.3	0.8461
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	6.5	0.8279
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	6.9	0.8431
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10010141 [exp]	9.2	0.8211
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	10.0	0.8232
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	11.5	0.8290
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	12.1	0.7765
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	13.8	0.8332

Compare expression of checked genes

Lus10024442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.