Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20430 182 / 7e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007452 [exp] 387 / 6e-137 AT3G20430 190 / 1e-59 unknown protein Lus10000887 [exp] 310 / 2e-107 AT3G20430 113 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232800 [exp] 204 / 2e-65 AT3G20430 193 / 5e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10258 [flax] [poplar] RNA_GG_bind PHAX RNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024443 pacid=23170202 polypeptide=Lus10024443 locus=Lus10024443.g ID=Lus10024443.BGIv1.0 annot-version=v1.0 ATGGAAGACGAAGCCAATATCCTGGACTCCATACTAGACGATGAAGGCGAAGACGTCGATATGGTCGACGTTGAAGAAGGCGAGTTGCTCGAACAAACTG ATGCTAGCCAGACCTGCTGTGCGACTGGCAATGGCGGAGACGGAGTTTCTAAAACAACTGACGATCATCCAACTACGAAAAAGAAAAGGCGTAATAGGAA GAGGAAGAAGCCAGCCGGTGCTCTGCGCCTGCCCGTAAGCATTGACAGATTTGTGTTGGATACGTGTAGGCGTCTGAAAGAAAAGAAATCATATTTGGTA TACACTGCCGTTGGGATTCTTGGACTTGAAGTGTTGAGCGATCTAGTTAGAGAGGTGGGTGCTATTCAGTCATGTGGAGGACAGATGACTTCAGATGGAA AACGTTCTCGAACCGGTGGTGGAATTTTATGGAACATCTTAAAGACGAGAGAGCCTTCAGCATACAAAGAAATAATGAAGAAAGCAACTGAGTTTGAGAA ACAATTCAAGCAACAAAAGCCAATGAGACCAGCTGCTGCCAAGAACACAGTAGGTGTGTCCAATGAAACTGCACGGGCCGGCACTAATGCTGCTCCAAAT GATTTGTCGAATGGAACTGCACATGCAATCACTAATGAGACTACAAATGTTAGCAGGCTTGTGGCCGAAAGCCAGCTCGAGAAGGAAAACGTTGAAACGA AGCGCAGGTCTGTTCATGATAGGATTAGAGTGCCTGTTTCGTACGAGGATCTGATTCAGGATGATGATCCAAATGACAGCTGCACATTGAATTCCTAG
AA sequence Show only first row Show all	>Lus10024443 pacid=23170202 polypeptide=Lus10024443 locus=Lus10024443.g ID=Lus10024443.BGIv1.0 annot-version=v1.0 MEDEANILDSILDDEGEDVDMVDVEEGELLEQTDASQTCCATGNGGDGVSKTTDDHPTTKKKRRNRKRKKPAGALRLPVSIDRFVLDTCRRLKEKKSYLV YTAVGILGLEVLSDLVREVGAIQSCGGQMTSDGKRSRTGGGILWNILKTREPSAYKEIMKKATEFEKQFKQQKPMRPAAAKNTVGVSNETARAGTNAAPN DLSNGTAHAITNETTNVSRLVAESQLEKENVETKRRSVHDRIRVPVSYEDLIQDDDPNDSCTLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20430			unknown protein		Lus10024443 [exp]	0	1
AT2G37960			unknown protein		Lus10027749 [exp]	2.4	0.7425
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10017114 [exp]	21.2	0.6107
					Lus10011613 [exp]	27.9	0.6166
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	36.8	0.6030
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	37.2	0.6216
AT4G37810			unknown protein		Lus10011591 [exp]	39.6	0.6433
AT5G66540			unknown protein		Lus10042107 [exp]	53.1	0.6201
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	63.8	0.5704
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	79.1	0.6059
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	92.3	0.5894

Compare expression of checked genes

Lus10024443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.