Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40290 211 / 1e-67 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) AT5G05470 186 / 6e-58 ATEIF2-A2, EIF2ALPHA ,EIF2 ALPHA eukaryotic translation initiation factor 2 alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007521 [exp] 242 / 8e-80 AT2G40290 558 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Lus10017435 [exp] 241 / 2e-79 AT2G40290 559 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072500 [exp] 224 / 6e-73 AT2G40290 547 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Potri.010G184900 [exp] 223 / 1e-72 AT2G40290 551 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07541 [flax] [poplar] EIF_2_alpha Eukaryotic translation initiation factor 2 alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10024444 pacid=23170211 polypeptide=Lus10024444 locus=Lus10024444.g ID=Lus10024444.BGIv1.0 annot-version=v1.0 ATGGTTAGTGAGGATGCCATTCATGCCTGTGAAGTGAGGTACAACAAGGGTAAGGTCGTTCATTCCATCATGCGTGACGTTGCTGCTGATCAGACACTAA TTGGACTTGATTTGGAGGATCTCCACCTTCATATTGGCTTGGCTGGCCTCTTTACCGGAAATATGGCATTCAAAACCATTGTGAATAATGAGACTGACAC TGATTCAGTTGTTAGTTCCCTTACCCGTGGAGTCAAGGAAGTTGGTCTTGATGGACAGGAGGTAACCAAGGTCGTGCCAGAGGAAGTTAAAGACATGACT CCCCAGACTTTGAAGATACGAGCTGACATAAAAATCAAGTGCTTTCAGTTTAATGATGACGATGTCCTTCATATTCAGGATGCAATGAGAAAGGTAGAAG CTGCTGGTAACAAAGATTGCCCTGTGAAGATTAAGCAAGTTTCTCCTCTATTTTATGTGGTTACTACGCAAACGCTAGACAAGGATCAAGGAATATCCAT CCTTACCAAGCTAATTGCCGCATGCAGTGAAGCAATACAAGAGAAGAGAGGGGAGCTTACAGTAAACACGGCTCCCAGAGTGCTGGAGGTCGAACAAGAC ACTGGAATGGGAGATGTAGATGCAGAATAG
AA sequence Show only first row Show all	>Lus10024444 pacid=23170211 polypeptide=Lus10024444 locus=Lus10024444.g ID=Lus10024444.BGIv1.0 annot-version=v1.0 MVSEDAIHACEVRYNKGKVVHSIMRDVAADQTLIGLDLEDLHLHIGLAGLFTGNMAFKTIVNNETDTDSVVSSLTRGVKEVGLDGQEVTKVVPEEVKDMT PQTLKIRADIKIKCFQFNDDDVLHIQDAMRKVEAAGNKDCPVKIKQVSPLFYVVTTQTLDKDQGISILTKLIAACSEAIQEKRGELTVNTAPRVLEVEQD TGMGDVDAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	0	1
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	3.5	0.9581
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	4.5	0.9368
					Lus10019151 [exp]	4.9	0.9571
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	6.7	0.9567
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	7.5	0.9548
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10010491 [exp]	7.6	0.8775
					Lus10009892 [exp]	8.7	0.9522
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	9.2	0.9409
					Lus10012079 [exp]	10.4	0.9437
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	11.4	0.9016

Compare expression of checked genes

Lus10024444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.