Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019815 [exp] 233 / 1e-79 ND / Lus10014101 [exp] 232 / 4e-79 ND / Lus10014099 [exp] 229 / 3e-78 ND / Lus10019813 [exp] 229 / 5e-78 ND / Lus10028949 [exp] 196 / 5e-65 ND / Lus10029851 [exp] 151 / 4e-47 ND / Lus10037860 [exp] 151 / 5e-47 ND / Lus10039879 [exp] 141 / 5e-43 ND / Lus10000191 [exp] 141 / 6e-43 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 188 / 1e-61 ND / Potri.002G158600 [exp] 184 / 2e-60 ND / Potri.002G158700 [exp] 182 / 1e-59 ND / Potri.019G100100 [exp] 180 / 2e-58 ND / Potri.014G082700 [exp] 176 / 3e-57 ND / Potri.014G081900 [exp] 173 / 9e-56 ND / Potri.003G126200 [exp] 157 / 2e-49 ND / Potri.014G082000 [exp] 149 / 2e-46 ND / Potri.003G126400 [exp] 116 / 5e-34 ND / Potri.017G153100 [exp] 110 / 9e-31 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024445 pacid=23170212 polypeptide=Lus10024445 locus=Lus10024445.g ID=Lus10024445.BGIv1.0 annot-version=v1.0 ATGCCGTATCCCCTTAACAAGTCAATCAAACTCTTGGATCGATATTCCGGAATTTCGGGATCACTCCGCCACCGGGGCAGTGTAAGTAACCAGGGAGAAG AATCAGACTGTTGCAAGGCAGGCAAGCACTACACCACCTACAAATGTTCGCTTCCCGTGACTGGCCGAACTAAGGCCACTCTTACTTGGAACAGCTTCGA GAACAAGTACCACCCTGATGACCATCTAGTCGTTGCACTGTCGACTGGATGGTTCAACAACAAGAGCAGGTGTCTCAACTTCATCAACATTTATGGGAAT GGGAAGAGTGTTAGGGCTATGGTGGTTGATGAATGTGACTCCACCATGGGATGTGATACCAATCATGATTATCAGCCTCCTTGTCCTGATAACATCGTTG ACGCTTCTAAAGTAATGTGGAAAGCGTTAGGAGTGCCCGAAAATAATTGA
AA sequence Show only first row Show all	>Lus10024445 pacid=23170212 polypeptide=Lus10024445 locus=Lus10024445.g ID=Lus10024445.BGIv1.0 annot-version=v1.0 MPYPLNKSIKLLDRYSGISGSLRHRGSVSNQGEESDCCKAGKHYTTYKCSLPVTGRTKATLTWNSFENKYHPDDHLVVALSTGWFNNKSRCLNFINIYGN GKSVRAMVVDECDSTMGCDTNHDYQPPCPDNIVDASKVMWKALGVPENN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024445 [exp]	0	1
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	2.4	0.9135
					Lus10016134 [exp]	3.7	0.9024
					Lus10035048 [exp]	5.7	0.9268
AT1G02550			Plant invertase/pectin methyle...		Lus10039849 [exp]	6.9	0.8878
AT4G27570			UDP-Glycosyltransferase superf...		Lus10039236 [exp]	7.5	0.9117
AT2G43610			Chitinase family protein (.1)		Lus10003586 [exp]	15.4	0.8849
AT4G37445			unknown protein		Lus10001408 [exp]	15.4	0.9095
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	17.3	0.9054
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	18.0	0.8947
					Lus10035062 [exp]	19.6	0.9038

Compare expression of checked genes

Lus10024445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.