Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32940 716 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 701 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT1G62710 533 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT3G20210 447 / 5e-154 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 103 / 6e-24 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007450 [exp] 924 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 533 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 531 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10033344 [exp] 474 / 2e-164 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 257 / 8e-82 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 104 / 5e-27 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 108 / 1e-25 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 106 / 7e-25 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 66 / 1e-11 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G059400 [exp] 776 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.006G232900 [exp] 770 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 563 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 551 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.008G003400 [exp] 528 / 0 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 106 / 9e-25 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF01650 [flax] [poplar] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Lus10024446 pacid=23170259 polypeptide=Lus10024446 locus=Lus10024446.g ID=Lus10024446.BGIv1.0 annot-version=v1.0 ATGTCGATTTTACCCGCCGCCCTCTCCCTTTTACTCCTAGCTCTCTTCACCACCGTCTACTCTGCTCGTCCTGATAACGACGTCATACGCTTGCCGTCTT CTGCAGCTTCCAGGTTTTTCCGCTCGGGTGGAGTTGACGATGCCGACTCTACGGGTACAAGGTGGGCGGTCTTGATCGCCGGATCCAATGGATACTGGAA TTACAGACACCAGGCTGATGTATGTCACGCATATCAGCTGTTGAGGAAAGGGGGTCTAAAAGATGAGAATATAATTGTTTTCATGTATGATGATATTGCT GATAATGAAGAAAACCCAAGGCCTGGTGTCATAATCAACAGTCCAAACGGTGAAGATGTTTACAAAGGAGTTCCAAAGGATTATACAGGGGAGGATGTCA CAGTGCGCAACTTTTTTGCTGCAATCCTTGGTAACAAGACTGCACTCACTGGGGGCAGTGGGAAAGTGGTGGATAGTGGTCCTAATGATCATATTTTCAT ATACTACACCGATCATGGAGGTCCCGGAGTTCTAGGAATGCCTACTAGTCCTTACATTTATGCCGGTGATCTGATAGATGTTTTAAAAAAGAAGCATGCT TCTGGAACTTATCAAAGTTTGGTGTTCTATCTGGAAGCTTGTGAATCAGGAAGTATCTTTGAAGGTCTCCTTCCAGAAGGTTTGAATATTTATGCAACCA CTGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTACTGTCCTGGAGATTATCCCAGTCCACCCCCGGAGTATGAAACCTGTTTAGGTGACCTGTACAG TGTTGCTTGGATGGAGGACTGTGTTAGTTGGCTCCTTGTAATGCTATCTGAGGAAAAAAAACGCTTGGCCGTCAGTAGTAACCCTGAAGTTTTTTATGGA AACTGGAATTGCTTGCTAAGCCTTCCTGCAAAGCTTAATCTGGTTAAGAGCAGGACTTCAAATGACAACTCTCTGTATGGTTCCCATGTCATGCAATACG GTGACTTGGAACTTAGCAAGGACATGCTTGACATGTATATGGGTACAAATCCAGCAAATGATAACTTCAGTTTTGTGGACATGAATGCCATAACACCACC CGTCAAAGCTGTTAACCAACGTGATGCTGATCTTGTCCATTTCTGGGATAAGTACCGGAAGGCCCCTGAAGGGTCCGCAAGGAAGGCAGAAGCTGAGAAG CAGGTTATGGAGGCAATGTCACACAGAATGCATATAGACAACAGCATGAAACTCATTGCAAAACTCCTATTCGGAATCAACAAGGGATCAGAGGTGCTCA AAACTGTTCGCCCTGCTGGACAACCCCTTGTTGACGATTGGAACTGCCTTAAAACACTGGTGCGGACTTTTGAGACGCACTGTGGGTCGCTGTCCCAGTA CGGAATGAAGCACATGAGATCCATAGCAAATCTGTGCAATGCTGGAATTGACAATCACCAAATGGGAGAGGCATCGAGCCAAGCTTGTGTGAGCGTTCCG ACCAGCCCTTGGAGCTCCCTTCAAAGAGGGTTCAGTGCATAA
AA sequence Show only first row Show all	>Lus10024446 pacid=23170259 polypeptide=Lus10024446 locus=Lus10024446.g ID=Lus10024446.BGIv1.0 annot-version=v1.0 MSILPAALSLLLLALFTTVYSARPDNDVIRLPSSAASRFFRSGGVDDADSTGTRWAVLIAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIA DNEENPRPGVIINSPNGEDVYKGVPKDYTGEDVTVRNFFAAILGNKTALTGGSGKVVDSGPNDHIFIYYTDHGGPGVLGMPTSPYIYAGDLIDVLKKKHA SGTYQSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGDYPSPPPEYETCLGDLYSVAWMEDCVSWLLVMLSEEKKRLAVSSNPEVFYG NWNCLLSLPAKLNLVKSRTSNDNSLYGSHVMQYGDLELSKDMLDMYMGTNPANDNFSFVDMNAITPPVKAVNQRDADLVHFWDKYRKAPEGSARKAEAEK QVMEAMSHRMHIDNSMKLIAKLLFGINKGSEVLKTVRPAGQPLVDDWNCLKTLVRTFETHCGSLSQYGMKHMRSIANLCNAGIDNHQMGEASSQACVSVP TSPWSSLQRGFSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	0	1
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	1.0	0.9067
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	2.0	0.8939
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	2.8	0.8746
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	2.8	0.8995
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	3.9	0.8993
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006699 [exp]	5.3	0.8644
AT1G02070			unknown protein		Lus10015899 [exp]	7.7	0.8562
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	8.9	0.8702
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	10.1	0.8766
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	10.2	0.8622

Compare expression of checked genes

Lus10024446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.