Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25150 988 / 0 TAF5 TBP-associated factor 5 (.1) AT3G49660 125 / 3e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 124 / 9e-31 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 119 / 7e-28 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G11160 119 / 2e-27 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 117 / 2e-27 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G08390 115 / 2e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 114 / 5e-26 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 114 / 1e-25 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 108 / 9e-25 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007449 [exp] 1353 / 0 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 136 / 2e-33 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 125 / 2e-31 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 125 / 3e-31 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 128 / 1e-30 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 120 / 9e-30 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 118 / 5e-29 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 121 / 6e-28 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 121 / 6e-28 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020200 [exp] 1070 / 0 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 1069 / 0 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 134 / 9e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 133 / 4e-34 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 119 / 2e-29 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 119 / 4e-28 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G050100 [exp] 117 / 2e-27 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 116 / 4e-27 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.001G221000 [exp] 112 / 6e-27 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 115 / 3e-26 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04494 [flax] [poplar] TFIID_NTD2 WD40 associated region in TFIID subunit, NTD2 domain
Representative CDS sequence Show only first row Show all	>Lus10024447 pacid=23170203 polypeptide=Lus10024447 locus=Lus10024447.g ID=Lus10024447.BGIv1.0 annot-version=v1.0 ATGGACGAGGAGCAAGTTGTGAAATTTGTCGAAACTTACTTGAAGAAGAAAGGCTTCAAGCAAGCGGAGCTTGCTTTCCACGACGAAGTTCAGAAAAACT CCAATGCCAGCTCAATCAATATCCACACTGACCCGGACCTCTCAAATCTCCTTCTCTCACTCTCGCAGTCAGAGGACAGTTCAGGAAGGTACCATGAAGA GTATGGTAAATTGAGGGCATGGAGCTATAATTCGCTTGATTTGTACAGGCATGAGCTGCTACGGGTGCTCTATCCTGTATTTATTCATTGCTACATGGAT CTAGTGGCAAAAGGCCATATTCAAGATGCTAGAGCCTTCTGCAATACTTTCCGTGAAGACCATGAAATGATTCATTCCAGAGACCTTCAGAAGTTGGAAG GAGTTCTCTCACCCTCTCATCTACAGGTTCAGACTGCAGCAAACCTTAAATCTGTTTTAAGGGCTTCTGCTATCATGTATATAAAGTTTGGATCCAAGCG AAGCAAGATAAATTATGCTTCTCATGCTCTTGCTCTTTTTCAGGAGATGGAATTTGCACATACGCTCAGGCAAAGCAAAGTCAACATAAAGATGTGCGAG TATTCCAATGAGCTCCTGATGCAGCATCTTCTGAAGACAAAATCTACCACAGTGCTTGGGATTATCAATGAACGCATTAACTTCCAAGTTTCTCCTGGAC AACCAGGTTCCATTTCGGATGATGCCGAGGTTGTGACACTGATTGGAAGCACCCAGGATACAGCGAATCAGATTAACAAGAAAGAAGTACATTGGGGGCT ACTTGAAGATTCTATGGAAGATCGGTTGGAAAAGGCTGGGGGTTTGAATTCTGATGGAGAGAAGCCAGAAGGAGAAGCAAAAGATGGCGAGATTGATGAT AACAAGAAACGAATAGCAGAAGGTGGAAAGCAAGGTGCTTCTTCCAAAAAGTTTAAGAAGGACAAAACAGCTGGAGCATCAGCAAAAGTTGCTCGACCTG AAACTGTTGCTGCACCTGCTGCCCCTCGAGTCAAACCGGAGCTTCCTTTGCCAATAATGCCAGCAGAAGTCGAGCAGTCAATCCTCGAGGACTTAAGAAA CCGTGTTCAGTTAAGCAGTGCAGCACTACCTTCAGTCAGTATGTACACATTTCTCAACACACATAACAGTTTGAACTGTTCCTCAATATCAAATGATGGA TCCTTAGTTGCTGGTGGATTTTCAGACTCGTCCCTTAAGGTGTGGGATATGGCGAAACTTGGACACCAAACTAGCAGTTCTGCTTTGCAGGCTGAAAATG AGATCTCTGGTGAGCACACACAAGGGCCAAACGGTAGCAAGAGATTCTACACATTGTTACAGGGCCATTCTGGTCCTGTTTATTCAGCCACTTTCAGTCC TCTTGGGGATTTCATTCTTTCATCTTCTGCGGACACAACGATCAGACTGTGGAGCACAAAACTAGATGCCAACCTGGTTTGTTACAAGGGTCATAATTAC CCTGTCTGGGATGTACAGTTTAGTCCCGTTGGACACTACTTTGCAAGTGCTTCTCATGATCGAACTGCAAGAATTTGGTCAATGGACAGAATACAGCCAT TAAGGATAATGGCAGGTCACTTGTCTGATGTGGACTGTGTGCAATGGCATGCGAACTGCAACTACATTGCGACTGGGTCGAGCGACAAGACAGTAAGACT GTGGGATGTACAGAGTGGGGAGTGTGTGAGGGTTTTCATTGGGCATAGGAGCATGATAGTATCGTTGGCGATGTCACCTGATGGCCGATTTATGGCATCT GGTGATGAAGATGGTACTATCATGATGTGGGACCTTTCAAGCGGCCGCTGTGTTTCACCGCTGATGGGTCATAACTCTTGTGTGTGGAGCCTTGCTTTTA GTTCTGAAGGTTCTCTTATGGCGTCGGGTTCAGCGGATTGCACAGTGAAACTGTGGGATGTAAATACGAGCACCAAGTTGACGAAAACTGATGAAGCAGT GAAAAGTGGAAATAACACAAGCAGATTGAGATCTCTGAAGACACTGGCAACAAAATCTACTCCAGTTTACTCTTTGAAGTTTTCGAGAAGTAATCTTCTA TTTGCAGCTGGCGTCCTCTCCAAGAATGTATGA
AA sequence Show only first row Show all	>Lus10024447 pacid=23170203 polypeptide=Lus10024447 locus=Lus10024447.g ID=Lus10024447.BGIv1.0 annot-version=v1.0 MDEEQVVKFVETYLKKKGFKQAELAFHDEVQKNSNASSINIHTDPDLSNLLLSLSQSEDSSGRYHEEYGKLRAWSYNSLDLYRHELLRVLYPVFIHCYMD LVAKGHIQDARAFCNTFREDHEMIHSRDLQKLEGVLSPSHLQVQTAANLKSVLRASAIMYIKFGSKRSKINYASHALALFQEMEFAHTLRQSKVNIKMCE YSNELLMQHLLKTKSTTVLGIINERINFQVSPGQPGSISDDAEVVTLIGSTQDTANQINKKEVHWGLLEDSMEDRLEKAGGLNSDGEKPEGEAKDGEIDD NKKRIAEGGKQGASSKKFKKDKTAGASAKVARPETVAAPAAPRVKPELPLPIMPAEVEQSILEDLRNRVQLSSAALPSVSMYTFLNTHNSLNCSSISNDG SLVAGGFSDSSLKVWDMAKLGHQTSSSALQAENEISGEHTQGPNGSKRFYTLLQGHSGPVYSATFSPLGDFILSSSADTTIRLWSTKLDANLVCYKGHNY PVWDVQFSPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMIVSLAMSPDGRFMAS GDEDGTIMMWDLSSGRCVSPLMGHNSCVWSLAFSSEGSLMASGSADCTVKLWDVNTSTKLTKTDEAVKSGNNTSRLRSLKTLATKSTPVYSLKFSRSNLL FAAGVLSKNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	2.6	0.8606
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	3.0	0.8349
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	6.5	0.8543
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	9.2	0.8240
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	10.2	0.8113
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	10.2	0.8099
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	11.8	0.8263
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	12.5	0.8241
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	13.9	0.8289
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	15.7	0.7837

Compare expression of checked genes

Lus10024447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.