Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25110 561 / 0 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 549 / 0 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G25090 449 / 2e-155 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 419 / 8e-144 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 403 / 3e-137 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G30270 397 / 7e-135 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G18700 390 / 9e-132 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT1G01140 375 / 1e-126 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT4G30960 364 / 3e-122 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT2G26980 363 / 8e-122 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007448 [exp] 746 / 0 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 478 / 2e-166 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 432 / 5e-149 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 420 / 7e-144 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 415 / 6e-142 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10041653 [exp] 402 / 1e-138 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10007283 [exp] 404 / 2e-137 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10028115 [exp] 399 / 1e-135 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 396 / 1e-134 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263500 [exp] 606 / 0 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 585 / 0 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.003G181900 [exp] 508 / 2e-178 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.016G133500 [exp] 432 / 2e-148 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 426 / 7e-147 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G156000 [exp] 422 / 5e-145 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 421 / 3e-144 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 419 / 8e-144 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G048800 [exp] 412 / 5e-141 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G062800 [exp] 400 / 6e-136 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024448 pacid=23170200 polypeptide=Lus10024448 locus=Lus10024448.g ID=Lus10024448.BGIv1.0 annot-version=v1.0 ATGGATGAGGAGACGAGGCAGGTTCTGTTTGGCAAGTACGAGACCGGAAGATTGCTCGGGAAAGGAACTTTCGCCAAGGTCTACTACGCCAAACACCTCG TCAGCGGCGAGAGCGTTGCTATCAAAGTCATCAACAAGGACCAGGTCAAGAAACAAGGTCTCATCGACCAGATCCAGCGTGAAATCTCCGTTATGCGACT CGTCCGCCATCCAAACGTCGTCGAGCTCAAGGAAGTCATGGCTACCAAGTCCAAGATCTTCTTCGTCATGGAGTACGTCCGCGGTGGAGAGCTCTTCGCA AAGGTCGCTAAGGGAAGACTCAAAGAAGACTCCGCCAGGAAATACTTCCAGCAGCTTATTAGCGCCGTCGATTTCTGCCACAGCAGGGGCGTCTCCCACC GCGACTTGAAGCCCGAGAACCTTCTATTAGACGAGAACGAGAATCTCAAGGTCTCCGACTTTGGCCTCTCCGCTCTCCCCGAACAGCTCCTCAACGACGG ACTCTTGCACACTCAGTGCGGCACCCCTGCCTACGTCGCGCCGGAGGTCTTGAGGAAGAAAGGATACAACGGAGCCAGAGCGGATATCTGGTCCTGCGGT GTTATTCTTTTTGTCCTCCTCGCTGGATTCCTTCCCTTTCAGGATGAGAACCTGATGAGGATGTACCGCAAGATTTTCAAGGCGGAGTTCGACTGTCCAC CGTGGGTTTCCGCCGAAGCGAGGCGATTGATTTCGAAGCTCCTGATGGCGGATCCGGCCCGGAGAATCACGGTCCCAGCGATTATGCGAGCTCCTTGGTT CAGGAAGGGGCTTTCTCGACCGGAATCAATTCCGATTGAGAAGAATGGAGAAGAAGAAGAAGAAGAAGAGAGCGGAGGAGAGGGAGGTAACAATAATAAT AACAGCTGCAGCGATAGCGATACCTCCTCGGCCAATTCGATTCCGAGCAGTACCAAAATCTCGTCTCCGAAATTCTTCAACGCGTTCGAGTTCATCTCGT CGATGTCGTCCGGATTCGACTTGTCAAGCCTGTTCGAGACGAAGAGGCGGCGAGGATCTATATTCACGTCGAGGAGCTCGGCGAGCGCGATTATGGCAAG GATCGAAGGATTCGCCAAGGGGATTAATTTTAGAGTGGGGAAGGTAAAGGATTTCAAGATGACTTTAGTAGGGGAGTGCGAAGGGAGGAAAGGAAGACTG TCAGTGACGGCGGAGGTGTTCGAGGTGGCCCCAGAAGTGGCAATAGTGGAGTTCACCAAGTCGGCCGGCGACACGTTGGAGTATGCAAAGTTCTGTGAGG AAGAGGCCAGGCCGGCGTTGAAGGACATAGTGTGGACTTGGCAAGGGGACACCGTTTGTAACGGTAACGGTACTGCTAACGGTTGCGGGGAAGACCATCC AAAAGGGCCAATCTTGATGTAG
AA sequence Show only first row Show all	>Lus10024448 pacid=23170200 polypeptide=Lus10024448 locus=Lus10024448.g ID=Lus10024448.BGIv1.0 annot-version=v1.0 MDEETRQVLFGKYETGRLLGKGTFAKVYYAKHLVSGESVAIKVINKDQVKKQGLIDQIQREISVMRLVRHPNVVELKEVMATKSKIFFVMEYVRGGELFA KVAKGRLKEDSARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKVSDFGLSALPEQLLNDGLLHTQCGTPAYVAPEVLRKKGYNGARADIWSCG VILFVLLAGFLPFQDENLMRMYRKIFKAEFDCPPWVSAEARRLISKLLMADPARRITVPAIMRAPWFRKGLSRPESIPIEKNGEEEEEEESGGEGGNNNN NSCSDSDTSSANSIPSSTKISSPKFFNAFEFISSMSSGFDLSSLFETKRRRGSIFTSRSSASAIMARIEGFAKGINFRVGKVKDFKMTLVGECEGRKGRL SVTAEVFEVAPEVAIVEFTKSAGDTLEYAKFCEEEARPALKDIVWTWQGDTVCNGNGTANGCGEDHPKGPILM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	3.5	0.8207
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	4.7	0.8141
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	4.9	0.8029
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	9.0	0.7848
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	10.2	0.7865
AT4G02090			unknown protein		Lus10010014 [exp]	19.3	0.7889
AT3G24535			unknown protein		Lus10023639 [exp]	21.5	0.7834
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	22.1	0.7847
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10017125 [exp]	23.2	0.7178
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	28.8	0.8022

Compare expression of checked genes

Lus10024448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.