Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25050 513 / 3e-162 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 471 / 2e-154 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 451 / 5e-137 actin binding (.1) AT1G31810 436 / 2e-132 AFH14 Formin Homology 14 (.1) AT5G07740 429 / 4e-127 actin binding (.1) AT5G07770 339 / 1e-101 Actin-binding FH2 protein (.1.2) AT5G07650 337 / 5e-100 Actin-binding FH2 protein (.1) AT5G07780 305 / 2e-92 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 316 / 5e-92 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 153 / 8e-41 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007447 [exp] 1718 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10035830 [exp] 502 / 6e-156 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 497 / 9e-153 AT5G58160 608 / 0.0 actin binding (.1) Lus10023804 [exp] 438 / 1e-132 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 434 / 2e-131 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 432 / 3e-131 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 360 / 2e-104 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 166 / 1e-44 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 109 / 7e-27 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019600 [exp] 546 / 2e-171 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 537 / 2e-168 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G185601 [exp] 512 / 1e-167 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G108000 [exp] 511 / 7e-161 AT5G58160 600 / 0.0 actin binding (.1) Potri.003G103800 [exp] 457 / 3e-139 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 456 / 2e-138 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 446 / 2e-134 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 280 / 7e-83 AT5G58160 598 / 0.0 actin binding (.1) Potri.005G026300 [exp] 92 / 1e-18 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.014G174700 [exp] 92 / 2e-18 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10024450 pacid=23170247 polypeptide=Lus10024450 locus=Lus10024450.g ID=Lus10024450.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTGAACAAGTTCAAAACCCACACTTCTACTACTCTCTTGGAGATCTCTGAAAGGGTTTATGTTTTCGACAGCTGTCTTGGAACTGATGATG AAGAAGATGATACAAAACTTCACACGAGTAGAAGCATTGTGGATCATCAGCAGCTTAAACAGAACTTCCCTGAATCTTGCTCATTCATGGTGTTTAGCTT CTGGGACAAGGGACACATGGCTGCTAGCCTCTTGTCTGAATCCGACACCATGACTGTGGTGGAATATTATTCATCTCACTACGCAGGTTGTCCTTTACCC CCAATGCTTATGATCCATCATTTCCTTAATTCCGCACAGACCTGGTTGTCTGCTGGACAGCACAATCTCCTCTTGATTCACTGCGAGCCTTGTGGTTGGC CCGCTATGGCTTTCATGCTTGCCGCTCTACTCATACATAGGAAGAAGCAACAATGCACCTCAGACCACCACTGGGCTTTACAATCGATATACGAGCAAGC GCCTCGAGAGCTGTTGTTGTTGGCAAGTGGATCCATTGATCCGCTCCCTTCACAACTCCGGTATCTAGAGTATGTGTCCTGGAATGTGGGGTATCAGTTG CCTCCTCCATTGAATAGAACACTTAGACTGGAATGCATTGTTCTTGCACTTGCTCTAAACATGGATGGATGCTGTAGTAAGCCAGCGTTCAGGATTATGG GTCGCGACTCTTTTAACGAAGATCAGGCTCCGAAACTGCTATTTGGGAGCCAGCATTACGAGAAGGCTGATTGTCAAGTGGTGAAGGTTGAAATTGATTG CAATGTGGAAGGTGATGTTGTGATAGAGTGTGTTGGCTTGGACAGTGTTAAGGAAAGAGAGGACGTCATGATGTTCAGGGTTATATTTCATACAGCTTTT GTAAGTTCAAAGGTTTTGGTTCTTACTCGCGAACAGATTGATACGTTACGGAACTTTGATAAGTTACCTAAGGACTTCAACGTAAAGGTTATGTTCTCAG AAATGGAGGCTGCTGCTCCAACTGATTTAGTTATTAAAGAGATTAAAGAATCCCATTATCCTAAGGCAGTATCCGTCAAAGATCTGGAGGAATCCAATGA CGTTGGTTCAATTGATACAGTGATGCAATCTAAGATTCCAGAACCAATTCATGATGCATCTAAGACAGTGTTGTCTAGTGAGCCACCTTCAGATGCAAAG TCGGTAGAAGCATCTTCTTCTTCGGAGACTAATTTACAAGGGACGGGTAATGAACAACAAGGGATGTGTGTGTTAATCAAAGTGCCTGCTCCATCAAAGA TCATAACCCCTAGAATCCCTCAAACTCCAGGAGCTACTAATCTCTCGCAAGGATCGTCAATTACTGTGTCAAGATATCCTAATGCAGCCGCCTTTTCAGG CCTTGGTATTACAGCATTGTTACACGATCATGCTTCTCCGCCTACTACTCATGAATGTCCACGTTCAGTCAGTTTGAGTCCAACTGCTGTTTCCTCTCAA GTTACAAATGTGGGTAAATTTGTGAAGCAATCTCCACCGTCCTCCCAATCTGTTGTTAAAGCATCTGAATGTACAGAGAAAGCTTCTGCAGCTCCTGCTC TATCAACTCTAAATGCAACTGATGAGTCGTCCACTGAACATTCCGAACCTCCAATAAGAAAACTTGATAAATTTCCAGTCCCCCCTCCTCCACTTTTACC TCCTTTCCTTTCAAATTCATATAGATCACCTTTGGTTAAGTTTTCACCACCAGCACCACCACCTCCTCCACCACTACCTTCAGTTTCTAAAGCATTCATA AGAAAACCAGCCAGTAAAACTCTCAGCCCCACCACTCTCCTTCCTCCTTTACCTGCTTTACGTTCGTCTCCATTTAGGCAATCAGCAGCTCCTCCTGCTC CACCACCACCACCACTTTCTCTTTGGAAAGCATCAAGTCAAAAGACAGTTGCTTTCCCACCTTCTAACAGTGGAAGGAGCCTTTCTCCTTCAGCTAAGCA TGTTGTTTCCAGTAAATTAGATCACTCTTCACAGCCTTTCAAGAGCTTGTCAGTCATCTCTAGACCTTGTCTGCATCCTGTGTCAGTTCCATTGCCACCC ACTCCTCCTATGAAGAAACAAAATAATATATCTATCAATTCTGAAGATGTTCCTTCAATGCCACAACCACCACCTGCTCCTTCCGCAAAGGGATTAACAA AAGCTAGCTTTGGAGCTACTACAAACAGGAATGCCCCTCCTCCAGCTCCAGGGCCACCTTCACTTTCATCTTTCGGGGGAAAGGACCGACGCTCAAGAAA CCAGGTGCAAACTAGAAAGGCCAGCCTGAAGCCATATCATTGGTTGAAATTGACAAGAGTCACTCAAGGAAGTATATGGGCTGAGGCTCACAAGTCCAAT GACACCTTCATGACTCCTGAATTTGATATATCTGAACTTGAGAGCCTGTTTTCATCAACTAGTCTAAATTCTGATATGAAAGGCACTGGAGTTAAATCAA AGCGCCGCACCTCGGTACTGAAAACTGACAAAGTTCAACTGATTGAGCTCAGACGTGCATATAACTGCGAGATCATGCTTACAAAAGTTAAAATCCCTCT GCATGAGCTGACAAGTTCAGTCCTTGCTTTGGATGATTCAGTATTGGATGTTGATCAAGTCGATAGCCTTGTTAAGTTTTGCCCCACGAAAGAAGAGATG GAATTGCTCAAGGGTTATAAAGGAGACAAGGAAAGCTTGGGAAAATGTGAACAGTTCTTCTTGGAGTTAATGAAAGTGCAACGTGTAGAGTCAAAGTTAA GGGTGTTCTCGTTCAAGATGCAGTTCTCTCAGCAGGTTTCTGACCTGAGGAGAAACTTGAATGTTGTGAATTCAGCGGCTGAAGAGGCATGTCATTTGTT TTCTTCCTACTTTCTGGTTTATCAATTGGCATATTCTTGGACCATTTTAACTTACAACACCATCAACAATCGGTATTCACAGATCAGAAGCTCAAAAAAG TTCAAAAGGATCATGCAGTCTGTTCTATCCCTTGGAAATGCTTTGAACCAAGGAACTGCAAGGGGTTCTGCTGTTGGATTTCGACTGGACAGTCTACTCA AACTCACAGATACAAGATCTAGGAACAATAAGATAACTCTCATGCATTATCTTTGCAAGGTACTTGCTGAAAAGCTGCCAGAATTACTAGACTTCTCCAA GGATCTAGTGAGCTTGGAGGCTGCAACAAAAATACAACTGAAGTATTTAGCTGAGGAGATGCAAGCCATTAGCAGAGGTCTGGAAAAAGTTATACAGGAG TTGGTTGCCTCAGAGAATGATGGTGCAGTTTCGGAATACTTCTGCAAGATCCTGAGAGCATTCTTGAGTTATGCAGAAGGCGAAGTGAAATCCTTGGCGT CGCTCTATTCAATTGTCGGTAGAAATGCAGATGCATTAGCTCTATATTTCGGTGAAGATCCAACCCGCTGCCCATTTGAGCAAGTTGTCTCTACTCTGCT CAACTTTGCGAGGATTTTGGCGCGGGCACACGAAGAAAACTGCAAGCGAGTTGAATACGAAAAGAGAAAGGCAGAGAAAGAAGCTGAAAAGCAAAGAATG TTGTTGGACGACGTTGGTAGTGGTGGGGATTCAAAAAGGGAGCCTGTAATGTTTCATGCAATCAGGAGTAGGTATATCAGATGA
AA sequence Show only first row Show all	>Lus10024450 pacid=23170247 polypeptide=Lus10024450 locus=Lus10024450.g ID=Lus10024450.BGIv1.0 annot-version=v1.0 MALLNKFKTHTSTTLLEISERVYVFDSCLGTDDEEDDTKLHTSRSIVDHQQLKQNFPESCSFMVFSFWDKGHMAASLLSESDTMTVVEYYSSHYAGCPLP PMLMIHHFLNSAQTWLSAGQHNLLLIHCEPCGWPAMAFMLAALLIHRKKQQCTSDHHWALQSIYEQAPRELLLLASGSIDPLPSQLRYLEYVSWNVGYQL PPPLNRTLRLECIVLALALNMDGCCSKPAFRIMGRDSFNEDQAPKLLFGSQHYEKADCQVVKVEIDCNVEGDVVIECVGLDSVKEREDVMMFRVIFHTAF VSSKVLVLTREQIDTLRNFDKLPKDFNVKVMFSEMEAAAPTDLVIKEIKESHYPKAVSVKDLEESNDVGSIDTVMQSKIPEPIHDASKTVLSSEPPSDAK SVEASSSSETNLQGTGNEQQGMCVLIKVPAPSKIITPRIPQTPGATNLSQGSSITVSRYPNAAAFSGLGITALLHDHASPPTTHECPRSVSLSPTAVSSQ VTNVGKFVKQSPPSSQSVVKASECTEKASAAPALSTLNATDESSTEHSEPPIRKLDKFPVPPPPLLPPFLSNSYRSPLVKFSPPAPPPPPPLPSVSKAFI RKPASKTLSPTTLLPPLPALRSSPFRQSAAPPAPPPPPLSLWKASSQKTVAFPPSNSGRSLSPSAKHVVSSKLDHSSQPFKSLSVISRPCLHPVSVPLPP TPPMKKQNNISINSEDVPSMPQPPPAPSAKGLTKASFGATTNRNAPPPAPGPPSLSSFGGKDRRSRNQVQTRKASLKPYHWLKLTRVTQGSIWAEAHKSN DTFMTPEFDISELESLFSSTSLNSDMKGTGVKSKRRTSVLKTDKVQLIELRRAYNCEIMLTKVKIPLHELTSSVLALDDSVLDVDQVDSLVKFCPTKEEM ELLKGYKGDKESLGKCEQFFLELMKVQRVESKLRVFSFKMQFSQQVSDLRRNLNVVNSAAEEACHLFSSYFLVYQLAYSWTILTYNTINNRYSQIRSSKK FKRIMQSVLSLGNALNQGTARGSAVGFRLDSLLKLTDTRSRNNKITLMHYLCKVLAEKLPELLDFSKDLVSLEAATKIQLKYLAEEMQAISRGLEKVIQE LVASENDGAVSEYFCKILRAFLSYAEGEVKSLASLYSIVGRNADALALYFGEDPTRCPFEQVVSTLLNFARILARAHEENCKRVEYEKRKAEKEAEKQRM LLDDVGSGGDSKREPVMFHAIRSRYIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58160			actin binding (.1)		Lus10024450 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	2.0	0.8796
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	3.2	0.8264
AT5G58160			actin binding (.1)		Lus10007447 [exp]	6.0	0.8271
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	6.2	0.8619
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	7.7	0.8274
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	8.8	0.8231
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034794 [exp]	10.6	0.7999
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	17.9	0.7923
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10036473 [exp]	20.4	0.7722
AT2G33400			unknown protein		Lus10023739 [exp]	21.8	0.7980

Compare expression of checked genes

Lus10024450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.