Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31805 73 / 5e-14 WRKY family transcription factor (.1) AT5G10890 47 / 2e-05 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007445 [exp] 487 / 4e-172 AT4G31805 116 / 3e-29 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019400 [exp] 99 / 9e-23 AT4G31805 84 / 8e-18 WRKY family transcription factor (.1) Potri.006G263800 [exp] 52 / 3e-07 AT4G31805 93 / 2e-21 WRKY family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024451 pacid=23170244 polypeptide=Lus10024451 locus=Lus10024451.g ID=Lus10024451.BGIv1.0 annot-version=v1.0 ATGGCAATCACCACCACACCTCCACTTGACGACCACCCTTCACTTCCCAATAATTCCTCTTCCACTTCCGCCAACGCCTCGCATCGTCGGTTGCGTATCT CCGACATCCTAGCCTCTCCTCTCGACGACGAAGACGACCAACCGGAAGAAGAGGCTTTCCTGATCCGCCGCCGCAGTTTGGGGATGGGTGAAGGTAGTTT TCTCGAGGGTCGTCATCGCAATAGTAGTACTTCCTACCATTGTTCGTCCCCTTGCCGAGTTGTCTCCCGGTGGTTGTCATGGATGAGACGGTCTAAGACC AAAAGGATTTCCGGAAAATGCTCCAGAATTGAAGACGGCAGTAGGGCTGAGGCGGAAGAGTATAAAGATTTGACCGCGGTCGTGATGCAGCCTAGGTGTT CGATGAAAGGTCTCAACGATGGCTTCTCGGAGGAGAACGCTTCAGGGGATTCCAGTAGGAAGGAGGTTTCTTTTAACGCTGGGATCGGATGTTATCTTCT CTACTTAGTGGCGGCGACGAGAAATGAACTTGACAGGATCAACGGCGCGCGAGTGGAAATGGAGACTCTTCTTCAGAATACCAAACGGCAGCGGCGGAGG AGCGCGGACAGAAATGATGACTATGATGATATTCTGTTTGATTTTTCGGCCGGAAGAGCTAAAGAGCATCATCATGAGTTGGAGCCTCAAGTTTCTACGG AGATTCATATGAATAATTCTTATGCTTTGCCAGCTTCCTCAGGTAGCCAAGAGTCCGTCAATTGCGAGATTTCGAAAAGGGAAGAGTGTATGGAAGACAT GGAACATCTAGAGGTGGAACTTGAAGCTGAGCTACAGCTTTTGCAGCTCCAATTGGATCGAGACAAGTTGATGGAACGTTCACAACTTCAAAGGGTGAGA AATGAGGAGGAGAGTTGTAGTAGTATATCTTCGAGAAGCTACAGCATGATTTCATTAGAGGAAGAAGAAGGAGAAGTGATTGTTTGTGATCCAGAGCAAG GTGGGTTTTCTCCATATGAATTGGAAAGGAGGCTGCACCAAGTGCTTGAGACAAGACAGGAAGAGGAAATCAGGGAGCTGGAGGCTGCTTTAGAAAGTAT GAAGCAGAAGCTTCAAGTGAAGGAGATGGAGGTTTCCTGGTGGAAAGCTGCGGCAGCAAGAAGTGGAGGAGGGCTTCATTGTCCAGAGACTACTGAGATT GCGTCGTCGTCTTCACGGTTTGTTACAGAGCAGAAGAGTTGTTGCGAACAATGA
AA sequence Show only first row Show all	>Lus10024451 pacid=23170244 polypeptide=Lus10024451 locus=Lus10024451.g ID=Lus10024451.BGIv1.0 annot-version=v1.0 MAITTTPPLDDHPSLPNNSSSTSANASHRRLRISDILASPLDDEDDQPEEEAFLIRRRSLGMGEGSFLEGRHRNSSTSYHCSSPCRVVSRWLSWMRRSKT KRISGKCSRIEDGSRAEAEEYKDLTAVVMQPRCSMKGLNDGFSEENASGDSSRKEVSFNAGIGCYLLYLVAATRNELDRINGARVEMETLLQNTKRQRRR SADRNDDYDDILFDFSAGRAKEHHHELEPQVSTEIHMNNSYALPASSGSQESVNCEISKREECMEDMEHLEVELEAELQLLQLQLDRDKLMERSQLQRVR NEEESCSSISSRSYSMISLEEEEGEVIVCDPEQGGFSPYELERRLHQVLETRQEEEIRELEAALESMKQKLQVKEMEVSWWKAAAARSGGGLHCPETTEI ASSSSRFVTEQKSCCEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	0	1
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	1.0	0.8974
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	2.0	0.8568
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	2.0	0.8972
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	3.0	0.8958
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	5.1	0.8292
					Lus10037345 [exp]	6.9	0.8236
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	7.2	0.7897
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	7.9	0.8418
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	15.4	0.8266
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	18.6	0.8241

Compare expression of checked genes

Lus10024451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.