Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41980 294 / 1e-97 unknown protein AT1G43722 151 / 6e-43 unknown protein AT5G28730 121 / 7e-32 unknown protein AT5G35695 109 / 4e-28 unknown protein AT5G28950 105 / 3e-27 unknown protein AT5G12010 75 / 1e-14 unknown protein AT3G55350 71 / 3e-13 PIF / Ping-Pong family of plant transposases (.1) AT3G63270 68 / 2e-12 unknown protein AT4G10890 51 / 6e-07 unknown protein AT4G29780 51 / 9e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018174 [exp] 64 / 2e-11 AT5G41980 68 / 1e-12 unknown protein Lus10011946 [exp] 64 / 4e-11 AT4G29780 634 / 0.0 unknown protein Lus10025132 [exp] 48 / 4e-06 AT5G28950 55 / 1e-09 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04827 [flax] [poplar] Plant_tran Plant transposon protein
Representative CDS sequence Show only first row Show all	>Lus10024452 pacid=23170190 polypeptide=Lus10024452 locus=Lus10024452.g ID=Lus10024452.BGIv1.0 annot-version=v1.0 ATGGCTGAGGTACTGGATGGCCCTGATGATATGTGCAGGGAAATGTTTCGAATGGATAAACATGTCTTTCACAAGTTATGCAGTATTTTTCGACACAGAG GTTTGTTACGTGATACTTGTGGTGTTATGATAGAGGAACAAGTGGCCATTTTCTTGAACATCATAGGTCATAGCGAGCGCAACAGAGTGGTTCAAGAAAG GTTTCAGCATTCAGGTGAAACCATAAGTAGATATTTCAATAATGTACTCAAGTCGGTCAAATCACTTTCACGTGAGTTCTTACAGCCACCGCCGCAGACT ACTCCCCAAGAAATTCATGGTAGCAAGAGATTGTATCCATATTTCAAGGACTGTATCGGGGTTATAGATGGCATGCACATTCCTGCCAATGTACCGGCCA AAGATCAATCTAAATTTCGTAATAAGAAAGGATTCTTATCTCAGAATGTACTTGCAGCCTGTACATTTGACCTACAGTTCATTTTTATCTACCCCGGTTG GGAAGGATCTGCTCCCGATTCACGTGTCTTGAGAGCTGTTCTCGACGACCCTACTCAGAATTTCCCTCATGTTCCTCAAGGAAAATACTATCTAGTTGAC AATGGGTATATAAATATGGAAGGGTATATTGCTCCATATCCAGGTGTCCGCTGTAACATTCATCACTTCAAGGGTGCTAATCAGTTACCCAGAACTGCAG CGGAACTGTTTAATCATCGACATTCATCACTCAGGAATGCAGTCCATAAATCATTCAACGTTCTTAAGAGGAGGTTTCCTATCCTCAAAGTTGCGACGCA GTACGGGATTCACGTCCAAAGGGATATAGTGATTGCTGCCTGTGTGTTGCATAATTTTGTGAGACGCGAGGAACGCAAGGATTGGTTGTTTGCCAGTGTT GAAGGAGTTTCAGTGGGAGATGTATCGGAGTTTGACGAGCATGCTGAGATGTCGGAGTTGGGACCATCAATGCAGGAGGAAATAGCCTTCTCGTTGAGAG AATCAATGGCAGGTGCAATGTGGAATGACTTCATAAGCACATGGGATGAATGGTGA
AA sequence Show only first row Show all	>Lus10024452 pacid=23170190 polypeptide=Lus10024452 locus=Lus10024452.g ID=Lus10024452.BGIv1.0 annot-version=v1.0 MAEVLDGPDDMCREMFRMDKHVFHKLCSIFRHRGLLRDTCGVMIEEQVAIFLNIIGHSERNRVVQERFQHSGETISRYFNNVLKSVKSLSREFLQPPPQT TPQEIHGSKRLYPYFKDCIGVIDGMHIPANVPAKDQSKFRNKKGFLSQNVLAACTFDLQFIFIYPGWEGSAPDSRVLRAVLDDPTQNFPHVPQGKYYLVD NGYINMEGYIAPYPGVRCNIHHFKGANQLPRTAAELFNHRHSSLRNAVHKSFNVLKRRFPILKVATQYGIHVQRDIVIAACVLHNFVRREERKDWLFASV EGVSVGDVSEFDEHAEMSELGPSMQEEIAFSLRESMAGAMWNDFISTWDEW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41980			unknown protein		Lus10024452 [exp]	0	1
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	2.4	0.8405
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	4.7	0.8319
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	5.5	0.8079
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	5.7	0.8201
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	7.7	0.7882
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	11.7	0.7696
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	12.0	0.7880
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	12.5	0.8120
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	13.3	0.7753
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	14.4	0.7884

Compare expression of checked genes

Lus10024452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.