Plant FIBer expression Database

Lus10024453 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05800 49 / 2e-07 unknown protein
AT3G11290 48 / 3e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007443
[exp]
237 / 4e-82 AT5G05800 50 / 4e-08 unknown protein
Lus10025958
[exp]
83 / 1e-19 AT2G24960 102 / 4e-24 unknown protein
Lus10014257
[exp]
78 / 1e-17 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10002039
[exp]
70 / 4e-15 AT3G11290 91 / 2e-20 unknown protein
Lus10024329
[exp]
69 / 2e-14 AT5G05800 81 / 7e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G135901
[exp]
168 / 7e-55 AT5G05800 44 / 1e-05 unknown protein
Potri.002G023800
[exp]
82 / 2e-19 AT2G24960 89 / 2e-19 unknown protein
Potri.004G172900
[exp]
42 / 4e-05 AT2G24960 96 / 1e-21 unknown protein
Potri.017G120900
[exp]
41 / 7e-05 AT2G24960 50 / 1e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10024453 pacid=23170246 polypeptide=Lus10024453 locus=Lus10024453.g ID=Lus10024453.BGIv1.0 annot-version=v1.0
ATGGCTTATGCGGATGAAGATGTTTCTTCGGGCTCTGCAGATGGTGCTAACATGATAGATGGACACAACAACAAGCGGCAAACTGGAACACCAGCTAGCT
CTGGTCGTAGCAAGAGAGGCCGGAAGGCTACTGGTGACGCCATTGTCGATGCAATGCTTGAAATTGCCGCAGCCTCAAAATTGCGGGCAGCCGCCATCAT
GAAGAGTGAGGATCAATTTTCTATAAGCAAATGTATCAAAGTGTTGGATGAGATTCAGGATGTTGATCAACCGGTTTACTTTTTTGCGCTGGAACTATTT
GAGAACCCTGATGCTCGAGAGATTTTTATATCCCTTAAGAATGAGAGACGGCTCCCGTGGTTACAGGGGAAGTATAGTGCCAGCTCTAAATGA
AA sequence
>Lus10024453 pacid=23170246 polypeptide=Lus10024453 locus=Lus10024453.g ID=Lus10024453.BGIv1.0 annot-version=v1.0
MAYADEDVSSGSADGANMIDGHNNKRQTGTPASSGRSKRGRKATGDAIVDAMLEIAAASKLRAAAIMKSEDQFSISKCIKVLDEIQDVDQPVYFFALELF
ENPDAREIFISLKNERRLPWLQGKYSASSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05800 unknown protein Lus10024453
[exp]
0 1
AT3G63240 DNAse I-like superfamily prote... Lus10042619
[exp]
21.9 0.6456
AT1G11780 oxidoreductase, 2OG-Fe(II) oxy... Lus10037023
[exp]
28.1 0.6215
AT2G40190 LEW3 LEAF WILTING 3, UDP-Glycosyltr... Lus10010207
[exp]
39.7 0.5471
AT3G55620 eIF6A, EMB1624 embryo defective 1624, eukaryo... Lus10038669
[exp]
50.4 0.5505
AT5G11100 SYT4, NTMCTYPE2... synaptotagmin 4, Calcium-depen... Lus10006193
[exp]
82.6 0.5846
AT5G35910 Polynucleotidyl transferase, r... Lus10020293
[exp]
85.7 0.5626
AT5G11100 SYT4, NTMCTYPE2... synaptotagmin 4, Calcium-depen... Lus10041034
[exp]
95.9 0.5463
AT5G09300 Thiamin diphosphate-binding fo... Lus10033480
[exp]
137.5 0.5390

Lus10024453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.