Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59760 1498 / 0 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 449 / 3e-141 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 365 / 2e-107 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 170 / 9e-43 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G42270 66 / 1e-10 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 65 / 3e-10 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT5G61140 63 / 1e-09 U5 small nuclear ribonucleoprotein helicase (.1.2) AT4G32700 54 / 6e-07 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT3G27730 54 / 7e-07 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007442 [exp] 1059 / 0 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 471 / 5e-146 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 460 / 3e-145 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 436 / 1e-142 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022945 [exp] 369 / 3e-116 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 157 / 1e-38 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 117 / 4e-26 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10016048 [exp] 67 / 1e-10 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 66 / 1e-10 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228700 [exp] 1602 / 0 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 477 / 2e-148 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 462 / 8e-146 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 425 / 4e-137 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 166 / 1e-41 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.012G097300 [exp] 67 / 6e-11 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G095500 [exp] 67 / 7e-11 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 62 / 2e-09 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 58 / 4e-08 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.018G036600 [exp] 56 / 2e-07 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10024454 pacid=23170252 polypeptide=Lus10024454 locus=Lus10024454.g ID=Lus10024454.BGIv1.0 annot-version=v1.0 ATGGGGTCAGTGAAGAGAAAGTCTGTTGAGGATCCAGCTGGGGAGCTTCTGCCTCCGCAGAAACAGCATAGAGAGAATGGTTCAGCAGTCCCCATTCGAC AAGTAGCTTGTGTTCATGATGTCTCGTACCCTGAAGGCTACTTAGCTCCTCCTCTTTCCGACCCTACAGGTCAGAAGCCAGCAAAAGAGTTCCCCTTCAC ACTTGATCCTTTCCAGTCTGAGGCTATCAAGTGCCTTGACAATGGGGAGTCTGTCATGGTGTCCGCACATACATCAGCTGGAAAAACTGTGGTCGCTTCA TATGCTATTGCTATGTCTCTGAGGAACAAACAAAGGGTCATATATACCTCACCCATTAAGGCACTCAGCAATCAAAAGTATAGGGAGTTCAAGGAAGAGT TCTCTGATGTTGGTCTGATGACAGGAGATGTCACAATCGATCCTAATGCTTCTTGTTTGGTAATGACGACAGAAATCTGGCGTAGCATGCAGTATAGAGG GTCAGAAGTCACACGAGAAGTGGCATGGGTAATCTTTGACGAAGTGCACTACATGCGTGATCGAGAAAGAGGGGTAGTTTGGGAGGAAAGCATTGTTATG GCCCCAAAAAACTCTCGCTTTGTTTTCCTCTCTGCAACTGTACCTAATGCAAAGGAATTTTCTGATTGGGTTGCCAAGGTCCATAAACAACCATGTCACA TCGTGTATACTGACTACCGACCAACACCACTTCAACATTATCTTTTTCCTGCTGGGGGTGACGGCTTGTACTTGGTGGTGGATGAGAAGGGAAAATTTAG AGAGGGAAGCTTTCAGAAAGCGCTAAACGCTTTGGTTCCTAAAGGTGAACAAGAGAAAAGAAAGGAAAATGGGAAGTGGCAGAAGGGGTTGGTGGTTGGT AAGCTTGGTGAAGAAAGTGACATTTTTAAGATTGTAAAGATGATCATTCAGCGGCAGTATGATCCTGTAATTCTTTTCTCCTTCAGCAAAAGAGAATGTG AATTTCTAGCTATGCAGATGGCAAAGATGGATCTAAATGATGATGATGAGAAAGCAAACATTGAAAACATCTTTTGGAGTGCGATGGACATGCTTTCAGA CGATGACAAAAAACTGCCACAGGCAAATTTTCTTCCTGCAATGTTCTTGTCACATTGCTTGGCTCTTACAGCGGTTATAATTAAGACCTTGTTGAGGCTG ATCGTTATGTTTGGACTTTGGATGAGTTTAGACTTATCATATTTTGATGGGTTTTCTCATCTCCATGCCTCGTTGCTTATGTTCTCATTTTCATCTACAG GAGTACTCAGTAGGCAGGATGTTTCAAACATGTTGCCTCTCTTAAAGCGAGGCATAGGTGTGCATCATTCTGGATTGCTTCCTATTCTGAAGGAAGTTAT AGAGATTCTGTTTCAGGAAGGGCTGATCAAGTGTTTATTTGCCACAGAAACCTTCAGTATTGGTTTAAACATGCCTGCAAAAACGGTGGTGTTTACAAAC GTCCGGAAGTTTGATGGGGACAAGTTTAGATGGCTATCTAGTGGTGAGTATATACAAATGAGTGGGCGTGCTGGTCGTCGAGGAATTGATGACCGTGGAG TATGTATCCTTATGTTGGACGAGAAGCTCGAGCCATCTACTGCAAAAACAATGGTTAAAGGAAGTGCTGACAGTTTGAACAGTGCGTTCCATCTAAGCTA CAACATGCTTCTGAATCAACTGCGCAGTGAAGAAGGAAATCCAGAAAATCTACTTCGCAATTCTTTCTATCAGTTCCAAGCAGACCGTGCCATTCCTGAT TTAGAGAAACAAGCAAAACTCCTCGAGGAAGAGAGGGATTCGATTGTTATAGAAGAAGAAGATAGCCTCAAGAACTATTATGATATGATTCTTCAATACA GAAGCTTGAAGAAGGATGCTCGTGATATTGTGTTTTCCCCTAAACACTGTTTACCATATCTTCAATCCGGAAGGCTGGTTTGCATTGAGTGCTCTGGAAT TGATGAAAACTCATCTTCTTTCTCAATGGCAGACCAAGTCGCATGGGGTGTAATAATCAATTTTGGAAGAGTGAAAAGTGTTTCTGAAGATGACGCTAAT AAGAAACCAGAACATGCTAGCTACACAGTTGATGTACTCACAAGGTGTTTAGTAAACAAAGAGGGTGCTGTGAAAAAGACTATAAAAATTATTCCGTTGA GAGAGAGTGGAGAAGCTTTAGTTATTTCTGTACCTCTCTCCCAGATTATTAGCTTGAGTAGTGCTCGTTTGTATCTGTCGAAAGATCTTTTGCCATCAGA AATTCGGGAGAATACTCTGAAGCAGGTTGGAGAATTTCTATCTAGAAACCCTAGTGGATTGCCTTTAGATCCCGAAGGGGATATGAAGATTCAAAGCAGC TCATACAAGAAGTCAGTCAGACGTATAGAGGCTCTAGAGCATCTATTTAAGAAGCATGATATTTCGAAGTCCCCACTTATTGAGCAGAAGCTCAAGGTAT TACACAACAAGCAAGAATTAACAGCAAAGATCAAGTCTATCAGGAGACAAATGCGTACTTCCACTTCCTTGGCATTTAAAGATGAACTTAAAGCTCGAAG GCGGGTTCTCCGTAGACTGGGATATATTACCAGTGATGATGTGGTAGAGTTGAAAGGAAAGGTTGCTTGTGAAATTAGCAGTGCAGATGAGTTAACATTA ACAGAACTGGTGTTCAATGGGGTTTTAAAGGATGCCAAAGTTGAAGAGGTGATAGCTCTTCTCTCTTGTTTTGTGTGGCAAGAGAAGCTACAAGATGCTG CAAAGCCGAGGGAGGAACTCGACTTGCTCTTTATGCAATTGCAAGATACAGCTCGAAGAGTTGCCAAACTACAGCTTGAATGCAAGGTGCAAATTGACGT AGAAAATTTTGTGGGTTCGTTCAGGCCTGATATAATGGAGGCTGTTTATGCTTGGGCCAAAGGCTCCAAGTTCTACGAGATCATGGAGATCACACAGGTT TTTGAAGGTAGTTTGATCAGAGCTATTAGGAGACTAGAGGAAGTGCTTCAGCAGCTTATAGAAGCAGCGAAATCCATCGGTGAAATAGAACTAGAGGCCA AATTCGAAGAAGCTGTTTCAAAAATCAAGAGAGACATTGTATTTGCTGCATCTCTCTACTTGTAG
AA sequence Show only first row Show all	>Lus10024454 pacid=23170252 polypeptide=Lus10024454 locus=Lus10024454.g ID=Lus10024454.BGIv1.0 annot-version=v1.0 MGSVKRKSVEDPAGELLPPQKQHRENGSAVPIRQVACVHDVSYPEGYLAPPLSDPTGQKPAKEFPFTLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVAS YAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEVTREVAWVIFDEVHYMRDRERGVVWEESIVM APKNSRFVFLSATVPNAKEFSDWVAKVHKQPCHIVYTDYRPTPLQHYLFPAGGDGLYLVVDEKGKFREGSFQKALNALVPKGEQEKRKENGKWQKGLVVG KLGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNDDDEKANIENIFWSAMDMLSDDDKKLPQANFLPAMFLSHCLALTAVIIKTLLRL IVMFGLWMSLDLSYFDGFSHLHASLLMFSFSSTGVLSRQDVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN VRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMLDEKLEPSTAKTMVKGSADSLNSAFHLSYNMLLNQLRSEEGNPENLLRNSFYQFQADRAIPD LEKQAKLLEEERDSIVIEEEDSLKNYYDMILQYRSLKKDARDIVFSPKHCLPYLQSGRLVCIECSGIDENSSSFSMADQVAWGVIINFGRVKSVSEDDAN KKPEHASYTVDVLTRCLVNKEGAVKKTIKIIPLRESGEALVISVPLSQIISLSSARLYLSKDLLPSEIRENTLKQVGEFLSRNPSGLPLDPEGDMKIQSS SYKKSVRRIEALEHLFKKHDISKSPLIEQKLKVLHNKQELTAKIKSIRRQMRTSTSLAFKDELKARRRVLRRLGYITSDDVVELKGKVACEISSADELTL TELVFNGVLKDAKVEEVIALLSCFVWQEKLQDAAKPREELDLLFMQLQDTARRVAKLQLECKVQIDVENFVGSFRPDIMEAVYAWAKGSKFYEIMEITQV FEGSLIRAIRRLEEVLQQLIEAAKSIGEIELEAKFEEAVSKIKRDIVFAASLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	0	1
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	4.0	0.9255
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	4.2	0.9390
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	6.5	0.9362
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	7.0	0.9226
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	7.3	0.9289
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	9.2	0.9046
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	13.7	0.9200
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	13.9	0.9223
AT5G17160			unknown protein		Lus10038036 [exp]	14.5	0.9251
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	15.0	0.9251

Compare expression of checked genes

Lus10024454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.