Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59750 848 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 556 / 0 ARF ARF18 auxin response factor 18 (.1) AT2G46530 555 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 524 / 5e-179 ARF ARF9 auxin response factor 9 (.1.2) AT5G62000 521 / 3e-175 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G35540 434 / 2e-144 ARF ARF14 auxin response factor 14 (.1) AT1G34410 434 / 2e-144 ARF ARF21 auxin response factor 21 (.1) AT1G35520 425 / 4e-141 ARF ARF15 auxin response factor 15 (.1) AT1G34310 423 / 3e-140 ARF ARF12 auxin response factor 12 (.1) AT1G34390 415 / 4e-137 ARF ARF22 auxin response factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007440 [exp] 1278 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 574 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032541 [exp] 504 / 2e-168 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 503 / 8e-168 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032413 [exp] 426 / 2e-145 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10030240 [exp] 351 / 7e-114 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10031354 [exp] 356 / 4e-112 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 356 / 4e-112 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 356 / 6e-112 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228800 [exp] 976 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 969 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 595 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 575 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 564 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 559 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.012G106100 [exp] 506 / 3e-169 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 493 / 6e-164 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 478 / 3e-159 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 450 / 4e-148 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10024455 pacid=23170188 polypeptide=Lus10024455 locus=Lus10024455.g ID=Lus10024455.BGIv1.0 annot-version=v1.0 ATGGCATTCACTGCTACAAGTCATCCAACGGGAGCACACCTCCATCCAGGGGCCTGCAATGATGCTCTATACAAGGAGCTTTGGCACGCATGTGCTGGAT CTCTTGTTACCCTTCCTCGAGAAGGGGAAAGAGTGTACTATTTCCCACAAGGTCATATGGAACAGCTTGAAGCTTCGATGCAGCAGGGAGTAGAACATCA AATGCCCATGTTCAATCTTCCATCTAAGATTCTCTGTAAAGTTGTTAATGTACAGCGCAAGGCTGAAGCTGAAACTGATGAAGTTTATGCTCAAGTTACT CTGCTTCCAGAACCAGATCAAAGTGAAATAACCAGCCCTGATACACCCCTACCTGAACCTGAGAGATGTACGGTCCATTCTTTTTGCAAGACACTTACAG CTTCAGACACTAGTACCCATGGTGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTACCTTCGCTGGATATGTCCCAGCAGCCACCTTGGCAGGA ACTGGTAGCAACAGATCTTCATGGTAATGAATGGCATTTCCGTCACATTTTTCGAGGTCAACCAAGGCGCCATTTACTAACGACTGGATGGAGTGTATTT GTTAGTTCAAAAAAGTTAGTTGCAGGGGATGCCTTCATCTTCTTGAGGGGAGAAAGTGGAGAGCTTCGTGTTGGTGTTAGGAGGCATATGAGACAACAGA CAAACATGCCATCTTCTGTTATATCTAGTCAAAGTATGCACCTCGGTGTTCTTGCCACTGCTTCTCATGCGATTGCAACTGGAACTCTTTTCTCTGTCTT CTACAAGCCAAGAACAAGTCGGTCTGAGTTCATTGTAAGTGTCAACAAGTACCTTGAAGCCGTAAATTACAAGCTGTCTGTTGGAATGAGGTTTAAGATG AGATTTGAGGGGGAGGAAGTTCCGGAACGAAGGTTCAGTGGCACAATTGTTGGAGTTGGGGACGATGTATCATCTGGATGGTCTGACTCCGATTGGAGAT CGTTAAAGGTACAATGGGATGAGCCAGCTTCAATTTGGCGTCCTGATAGAGTGTCCTCTTGGGAATTGGAACCACTTATAGCGTCCACTCCTTCAAACTC TCAACCAATGAACCGGAATAACAAGCGGTTGCGACCATCAGTCATACCTTCGCCGAGTCCTGATCTCAATGGCATGTGGAAGGCACCAGTTGATTCCTCC AATCACTCACAATTTGATTCACGGTGTGGATATCTGTATCCATCACCTACTTATCCTGCAAAAACCAAGGCCAGCTCTCTTGGGTTCAGTGGAAATTGTC CGTTATCTGCAGTTTCAACCAATCCTTCATTGTATTGGCCAAAACAGGTGGAAGGTGTGACAGAATCCCTTTCCCCTGCCGTCAACAGAAATGTTGGGGA CATGAAACAGGGCACAGGAAATGGGTATAGGCTGTTTGGCATTCAACTTGTTGATAACTCCAATATGGAAGAAACATTGCTGGTTGGTGCTGTTTCACAA CCTGTAAGGGCCGATTGCCCAATTTTGTCAGTAGATGCTGAGTCTGATCAGCAGTCCGAGCCATCAAATGTCTTTCGATGTGAAATTGGCTCTGCAAGCT ATGATGCTGAGAAATCAAGTTTGCGATCTCCCCAGGAGCTGCATAGCAGGCAAGTTAGGAGCTGCACAAAGGTTCATATGCAAGGGATTGCTGTTGGAAG GGCAGTTGATTTGACACGGTTTGAGTGCTATGATGACCTGTTAAGCAAACTGGAGTATATGTTTGACATTCAAGGTGAGCTTAGGGGCTGCACTAAGAAA TGGCAGGTAGTGTACACCGACGATGAAGATGACATGATGATGGTCGGGGATGATCCATGGCATGAGTTCTGTAGCATGGTGAGGAAAATCTTCATCTACA CATCTGAGGAAGTGAAGAAGATGTCAGCTAAGGTAAAACTACCAGTCCGGGAAGATATGAAAACAGGCAGTGGCTGTGATGTGGATGTGGATGGAGCAGC AGCAGCAGCAGCTAACATGGAGGATCAATCATCCATTATTGGGTCGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10024455 pacid=23170188 polypeptide=Lus10024455 locus=Lus10024455.g ID=Lus10024455.BGIv1.0 annot-version=v1.0 MAFTATSHPTGAHLHPGACNDALYKELWHACAGSLVTLPREGERVYYFPQGHMEQLEASMQQGVEHQMPMFNLPSKILCKVVNVQRKAEAETDEVYAQVT LLPEPDQSEITSPDTPLPEPERCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPSLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVF VSSKKLVAGDAFIFLRGESGELRVGVRRHMRQQTNMPSSVISSQSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAVNYKLSVGMRFKM RFEGEEVPERRFSGTIVGVGDDVSSGWSDSDWRSLKVQWDEPASIWRPDRVSSWELEPLIASTPSNSQPMNRNNKRLRPSVIPSPSPDLNGMWKAPVDSS NHSQFDSRCGYLYPSPTYPAKTKASSLGFSGNCPLSAVSTNPSLYWPKQVEGVTESLSPAVNRNVGDMKQGTGNGYRLFGIQLVDNSNMEETLLVGAVSQ PVRADCPILSVDAESDQQSEPSNVFRCEIGSASYDAEKSSLRSPQELHSRQVRSCTKVHMQGIAVGRAVDLTRFECYDDLLSKLEYMFDIQGELRGCTKK WQVVYTDDEDDMMMVGDDPWHEFCSMVRKIFIYTSEEVKKMSAKVKLPVREDMKTGSGCDVDVDGAAAAAANMEDQSSIIGSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	0	1
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	4.2	0.7938
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	5.0	0.8407
AT5G20610			unknown protein		Lus10017162 [exp]	5.5	0.8325
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	5.9	0.8177
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	7.1	0.8238
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	8.7	0.8303
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028817 [exp]	11.0	0.7287
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	11.1	0.8297
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	11.2	0.7898
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	13.8	0.8056

Compare expression of checked genes

Lus10024455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.