Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49880 445 / 4e-146 mitotic checkpoint family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007438 [exp] 275 / 3e-88 AT5G49880 317 / 3e-105 mitotic checkpoint family protein (.1) Lus10033023 [exp] 265 / 5e-82 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10021194 [exp] 256 / 1e-80 ND / Lus10005469 [exp] 233 / 5e-72 ND / Lus10012671 [exp] 213 / 2e-64 ND / Lus10007439 [exp] 177 / 2e-49 AT5G49880 199 / 1e-57 mitotic checkpoint family protein (.1) Lus10005288 [exp] 106 / 3e-25 ND / Lus10005726 [exp] 112 / 4e-25 AT5G51200 2356 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1) Lus10038594 [exp] 75 / 3e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228900 [exp] 498 / 5e-167 AT5G49880 682 / 0.0 mitotic checkpoint family protein (.1) Potri.003G000900 [exp] 492 / 3e-164 AT5G49880 829 / 0.0 mitotic checkpoint family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05557 [flax] [poplar] MAD Mitotic checkpoint protein
Representative CDS sequence Show only first row Show all	>Lus10024456 pacid=23170256 polypeptide=Lus10024456 locus=Lus10024456.g ID=Lus10024456.BGIv1.0 annot-version=v1.0 ATGATGCTCAGAACTCCGCCTCCGAAGAGGTCAAGACCCATCGACGCCGCTCCAATCATCGAGACTCCACCTACCGCCGGTTCCGATCCTCGTCAGCTTG TTGTTTATGAAGATCCTCCTACTGAAAATCGGGATTCCCCCCATCAACACTCTGAGCACATGCTCTGTACCTACCAGTGCCGCCAAATGGTTAAAGCAGA TTTTCTCGATGCTTTGAGCAATGCGGAAAAGCAAGTTCAGGACTATCAGTCTCAACTGGCTGCATTGAATGAGAATTTTCTAAAAGCAGACGAGGAGAGA AAGAACTTCAAGGAGAAGCTATCATATGCAGAACAGGAACTTGCAGCTGCAAAAGGGCGAGAGAAATCATTTCATGACCAACTACTGAAGGAAGTTAATG ACTCCCATGACCGGTTGAAAAAACAATTAGAATTATCTATCAAACTTGAGGAGTCAGAGGTCAGAGAGGCAAGAAAACTGAAATTTGCTCATGAGAGTAT TGAACTAATGAATGAAAAACTTTTGGAAGAAAAGAGCCGCAGAGAGAGGGCAGAGTTGCAACTCTCGAAGCTACAAGAGTATGAGGTTAAGATGACAAAA TTGGAGGATGATTTATCTGTTTGGAAGCTTATGATTCAGAACATCCCTGACGTTTCATGCTGTGATGATGTACCTTTGAAAATTGCAGCTTTACAGAGAG AGGTGATCGATAACAGGAAGAAGTTTGGTGAGGTGAGTGCTCAATTGAAACAAGTGGAGGTGATTCTGGACACAACCCAACTTGATAAACAAAAAACTGA AACAGAGGCTGCATTGGCTAAAGAAGAAGTTGGTCGATTGGAAGGAGAGGTTAGCAGGATCAGTTTGATGCTTTCTGCGGTTTCTGAAGAAAGGAATAGG TTAAAAAGTGTCATTGAAGATTTCAAATCAAAGAACGAAAAGGGAGGGGAGAGTACAACTGGTGGTGTCATGCAGGAGCTTGAATTATCTCTTTTGAAAA AGGAGTCTTACATCGAAGAATTAGAAAGAGATTTAGATGCACAAAAGGAGATCCACTACCATCAACGGGATGAAATAAAGTCACTTCATGATAGACTGAA TAATGAAGCTAGGAGAGTTAAATCCTTGGAGAGGGAGAGTGATCGCCTTCGGTCAGAGATTTCTCTGTTAGAGTCCAAGCTAGGTCATGGTGACTTCTCT GCTGCCAATACAAAGGTGTTAAGAATGGTTAATACTCTTGCAGTTGATGATGATGCCAAACAAACCATAGAGGCCTTGCAGAGTGAGTTGCAGAAGACGA AAGAAAAGTTACAAGCACTTGAAGAGTTGAAGAGTCAGCCTGGTGATGCTGGCAAGCTGGTAGACTCGTACATATCTGGCAAGGTGACACAGTTGAAAGA ACAAATTGCAACACTTGAAAAACGAGAAGAAAGATACAAAACAGTTTTCGCTGATAGAATCTCGGTCTTTAGGAGGGCTTGTTGTGAACTTTTTGGCTAC AAGATAGTGATGGATGAACGGCAGCGTCCAAATGGGATTCCAGTTACTCGGTTTACCCTTCAGTCCATATATGCACAGAGTGAAGATGAAAAGCTTGAAT TTGAATATGAATCAGGGAATACAAATATTGTGGTTAGCGTCCTAGCTGTTATATTGTCTCTGGTTTTCATGTCATTTCTAAATAAGAGGAGGAATTTTTC CAGAAGCTCATGCCCCTCATTTTTCTTCCCGCAGGCAAACGAGTACACCTCAGCGTCTGAAATTTCTCAGCAGTTTGACCCTCCCAATCAAGGCTTCCCG TCAGTTCATTATGGATATCAGAATGAGTATGACTGTGGTTATGGTGATTTCACCAATGGGAGTTCTAATGATCAAGGCTATTCAAATTGGCAAGACCAAT CTGGCTTTCATGGTGATTCACAATTTGGAAACTCGATGAATGGGAGTTATGGGCCCCCCATTTGGAGTTATGGTCCCTCCACTTCCAATGAAGATATTGT CAAGCTAATCCAAGACATTGAAGCTTGCTATCGTGCCGATATAGCTAAAGCGGTTCACAATGCGAGGATTGAAGCAACTTTGGGAGAGCTTCAAGAGTCC ATGAATGTCATTGCTTTCCAACTCAAAGAAGAAATAAATAGTCGCCGAGCATCTCAACAAGAAACTAGCTCTTCACGCCCTATCATGAAAACAACAACTG TTGAGAAGTTGTTAAGTGACTTTACAAGACAACTTGGGGCTAGATTGGTAAAGCAAGAAGACAAGATTGATCGCTTCTAA
AA sequence Show only first row Show all	>Lus10024456 pacid=23170256 polypeptide=Lus10024456 locus=Lus10024456.g ID=Lus10024456.BGIv1.0 annot-version=v1.0 MMLRTPPPKRSRPIDAAPIIETPPTAGSDPRQLVVYEDPPTENRDSPHQHSEHMLCTYQCRQMVKADFLDALSNAEKQVQDYQSQLAALNENFLKADEER KNFKEKLSYAEQELAAAKGREKSFHDQLLKEVNDSHDRLKKQLELSIKLEESEVREARKLKFAHESIELMNEKLLEEKSRRERAELQLSKLQEYEVKMTK LEDDLSVWKLMIQNIPDVSCCDDVPLKIAALQREVIDNRKKFGEVSAQLKQVEVILDTTQLDKQKTETEAALAKEEVGRLEGEVSRISLMLSAVSEERNR LKSVIEDFKSKNEKGGESTTGGVMQELELSLLKKESYIEELERDLDAQKEIHYHQRDEIKSLHDRLNNEARRVKSLERESDRLRSEISLLESKLGHGDFS AANTKVLRMVNTLAVDDDAKQTIEALQSELQKTKEKLQALEELKSQPGDAGKLVDSYISGKVTQLKEQIATLEKREERYKTVFADRISVFRRACCELFGY KIVMDERQRPNGIPVTRFTLQSIYAQSEDEKLEFEYESGNTNIVVSVLAVILSLVFMSFLNKRRNFSRSSCPSFFFPQANEYTSASEISQQFDPPNQGFP SVHYGYQNEYDCGYGDFTNGSSNDQGYSNWQDQSGFHGDSQFGNSMNGSYGPPIWSYGPSTSNEDIVKLIQDIEACYRADIAKAVHNARIEATLGELQES MNVIAFQLKEEINSRRASQQETSSSRPIMKTTTVEKLLSDFTRQLGARLVKQEDKIDRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49880			mitotic checkpoint family prot...		Lus10024456 [exp]	0	1
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	12.5	0.8470
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	17.0	0.8756
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	17.1	0.8542
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	17.3	0.8596
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	22.5	0.8230
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	31.9	0.8484
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	37.1	0.8308
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	46.3	0.8473
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	50.1	0.8083
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	51.2	0.8285

Compare expression of checked genes

Lus10024456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.